CX288660 | Citrus Genome Database

Overview


Name	CX288660
Unique Name	CX288660
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	447

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig141	contig	Ccv1_Contig141:1..447.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.782e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 112.464 bits (280), Expect = 8.445e-25
Identity = 55/60 (91.67%), Postives = 58/60 (96.67%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTL+DYN
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.217e-31
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQ RLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 107.457 bits (267), Expect = 2.717e-23
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYN
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.248e-28
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQ RLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 8.179e-20
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYN
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 4.050e-27
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQ RLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYN
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.539e-26
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1

Query:   73 TITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 261
            TITLEVE SDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63

HSP 2 Score: 95.1301 bits (235), Expect = 1.395e-19
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1

Query:  301 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            TITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 49

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.671e-20
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1

Query:   46 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            I VKTLTGK I +++E +DTID VK ++++KEGIPP Q RLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 80.1073 bits (196), Expect = 4.644e-15
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1

Query:  274 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1

Query:   46 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            I VKTLTGK I +++E +DTID +K ++++KEGIPP Q RLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1

Query:  274 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1

Query:   46 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            I VKTLTGK I +++E +DTID +K ++++KEGIPP Q RLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1

Query:  274 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 46/74 (62.16%), Postives = 58/74 (78.38%), Query Frame = 1

Query:   46 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            I VKTLTGK I +++E +DTID +K ++++KEGIPP Q RLI+AGKQL D +T  DYNI+  S LHLVL LRGG
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76

HSP 2 Score: 79.7221 bits (195), Expect = 6.066e-15
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1

Query:  274 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYN
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYN 60

[Close]

BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.795e-20
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1

Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 276
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP Q RLIF+GKQ+ D +T ADY +Q  S LHLVL LRGG  I
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLVLALRGGDSI 79

HSP 2 Score: 78.5666 bits (192), Expect = 1.351e-14
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = 1

Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 444
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADY 59

The following BLAST results are available for this feature:

BLAST of CX288660 vs. ExPASy Swiss-Prot

BLAST of CX288660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95


Match Name	E-value	Identity	Description
UBIQ_LEIMA	3.782e-33	92.11	Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1	[more]
UBIQ_LEITA	1.217e-31	89.47	Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3...	[more]
UBIL_NPVOP	6.248e-28	78.95	Ubiquitin-like protein OS=Orgyia pseudotsugata mul...	[more]
UBIL_NPVAC	4.050e-27	75.00	Ubiquitin-like protein OS=Autographa californica n...	[more]
UBIQ_LUMTE	1.539e-26	93.65	Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ...	[more]
RUB1_DESAN	3.671e-20	63.51	NEDD8-like protein RUB1 OS=Deschampsia antarctica ...	[more]
RUB2_ORYSJ	4.795e-20	62.16	NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap...	[more]
RUB1_ORYSJ	4.795e-20	62.16	NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap...	[more]
RUB1_ARATH	4.795e-20	62.16	NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN...	[more]
NEDD8_DROME	4.795e-20	56.96	NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=...	[more]

Pages

Properties


Property Name	Value
Genbank description	C02002H09SK IF1 Citrus clementina cDNA clone C02002H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288660 ID=CX288660; Name=CX288660; organism=Citrus clementina; type=EST; length=447bp
GAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCATGCAGATCTT
TGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG
ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCA
CCAGATCAGCANAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAG
GACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCTTCACTTGGTTC
TTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACACTCACTGGGAAA
ACCATCACATTGGAGGTTGAGAGTTCGGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAAAGGTTGATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAAC