CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:710..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 4.306e-51
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKRK KKDIS N RA+RRLRTACERAKRTLSS+ Q +IEIDSLYEGIDFY++ITRARFEELN D
Sbjct:  196 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKYKKDISDNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNAD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.624e-51
Identity = 96/113 (84.96%), Postives = 107/113 (94.69%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGG+FDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q +IEIDSLYEGIDFY++ITRARFEELN D
Sbjct:  196 LIFDLGGGSFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFITEFKRKHKKDISDNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNAD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP71_PARBA (Heat shock 70 kDa protein 1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.624e-51
Identity = 98/113 (86.73%), Postives = 105/113 (92.92%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LI DLGGGTFDVSLLTIEEGIFEVK+TAGDTH GGEDFDNR+VNHFV EFKRK+KKD+S N RALRRLRTACERAKRTLSS AQT+IEIDSLYEGIDFY++ITRARFEEL  D
Sbjct:  193 LILDLGGGTFDVSLLTIEEGIFEVKSTAGDTHFGGEDFDNRLVNHFVNEFKRKHKKDLSSNARALRRLRTACERAKRTLSSAAQTSIEIDSLYEGIDFYTSITRARFEELCQD 305          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP71_ORYLA (Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.624e-51
Identity = 97/113 (85.84%), Postives = 108/113 (95.58%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVKATAGDTHLGGEDFDNRMVNHFV+EFKRK+KKDIS N RALRRLRTACERAKRTLSS++Q +IEIDSL+EGIDFY+++TRARFEEL  D
Sbjct:  198 LIFDLGGGTFDVSILTIEDGIFEVKATAGDTHLGGEDFDNRMVNHFVEEFKRKHKKDISQNKRALRRLRTACERAKRTLSSSSQASIEIDSLFEGIDFYTSVTRARFEELCSD 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.593e-51
Identity = 96/113 (84.96%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKR +KKDIS N RA+RRLRTACERAKRTLSS+ Q +IEIDSLYEGIDFY++ITRARFEELN D
Sbjct:  196 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRNDKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNAD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.636e-50
Identity = 95/113 (84.07%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNHF+ EFKRK KKDIS N RA+RRLR+ACERAKRTLSS+ Q +IEIDSLYEG+DFY++ITRARFEELN D
Sbjct:  196 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKYKKDISDNKRAVRRLRSACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNAD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_TRIRU (Heat shock 70 kDa protein OS=Trichophyton rubrum GN=HSP70 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.636e-50
Identity = 97/113 (85.84%), Postives = 105/113 (92.92%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFD GGGTFDVSLLTIEEGIFEVK+TAGDT LGGE+FDNR+VNHFV EFKRKNKKD+S N RALRRLRTACERAKRTLSS AQT+IEIDSLYEG+DFY++ITRARFEEL  D
Sbjct:  194 LIFDFGGGTFDVSLLTIEEGIFEVKSTAGDTQLGGEEFDNRLVNHFVNEFKRKNKKDLSTNARALRRLRTACERAKRTLSSAAQTSIEIDSLYEGVDFYTSITRARFEELCQD 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 2.137e-50
Identity = 96/113 (84.96%), Postives = 107/113 (94.69%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLLTIE+G+FEVKATAGDTHLGGEDFDNR+V+HFV EFKRK+KKDI GN RA+RRLRTACERAKRTLSS+AQ +IEIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  194 LIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRKHKKDIMGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCAD 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.791e-50
Identity = 95/113 (84.07%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE GIFEVK+TAGDTHLGGEDFDNR+VNHF+ EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q +IEIDSLYEGIDFY++ITRARFE+LN D
Sbjct:  196 LIFDLGGGTFDVSILTIENGIFEVKSTAGDTHLGGEDFDNRLVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEKLNAD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.791e-50
Identity = 94/113 (83.19%), Postives = 107/113 (94.69%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVKATAGDTHLGGEDFDNR+VNHFVQEF+RK+KKD+  N RALRRLRTACERAKRTLSS+ Q +IEIDSL+EG+DFY+++TRARFEELN D
Sbjct:  196 LIFDLGGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGVDFYTSVTRARFEELNGD 308          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_ONCMY4.306e-5185.84Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP7C_DANRE5.624e-5184.96Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]
HSP71_PARBA5.624e-5186.73Heat shock 70 kDa protein 1 OS=Paracoccidioides br... [more]
HSP71_ORYLA5.624e-5185.84Heat shock 70 kDa protein 1 OS=Oryzias latipes PE=... [more]
HSP7C_CRIGR9.593e-5184.96Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_ORYLA1.636e-5084.07Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]
HSP70_TRIRU1.636e-5085.84Heat shock 70 kDa protein OS=Trichophyton rubrum G... [more]
HS7C1_DICDI2.137e-5084.96Heat shock cognate 70 kDa protein 1 OS=Dictyosteli... [more]
HSP7C_CHICK2.791e-5084.07Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP7A_DROME2.791e-5083.19Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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