CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:710..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCS2 (Chaperone protein dnaK OS=Mycobacterium smegmatis GN=dnaK PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 53/118 (44.92%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I +G+ EV+AT+GD HLGG+D+D+R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGDGVVEVRATSGDNHLGGDDWDDRIVTWLVDKFKGSSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCPA (Chaperone protein dnaK OS=Mycobacterium paratuberculosis GN=dnaK PE=2 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD  LGG+D+D+R+VN  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNQLGGDDWDDRIVNWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCGI (Chaperone protein dnaK OS=Mycobacterium gilvum (strain PYR-GCK) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 53/118 (44.92%), Postives = 79/118 (66.95%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TR+ F+++  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRIVEWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRSEFQKITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_FUSNN (Chaperone protein dnaK OS=Fusobacterium nucleatum subsp. nucleatum GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEEL 332
            L+FDLGGGTFDVS+L I +G+ EV +TAG+ HLGG+DFDN ++N  V EFK++   D+S +  A +RL+ A E+AK+ LS+  +T+I +  +             +TRA+F +L
Sbjct:  166 LVFDLGGGTFDVSVLEISDGVIEVISTAGNNHLGGDDFDNEIINWLVAEFKKETGIDLSNDKMAYQRLKDAAEKAKKELSTLMETSISLPFITMDATGPKHLEMKLTRAKFNDL 279          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_EMIHU (Chaperone protein dnaK OS=Emiliania huxleyi GN=dnaK PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 56/117 (47.86%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY---EG-IDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L + +G+FEV AT+GDT LGG+DFD ++V   V EFK     D++ + +AL+RL  A E+AK  LS+  Q++I +  +    EG       +TRA+FEEL  D
Sbjct:  189 LVFDLGGGTFDVSILEVGDGVFEVLATSGDTRLGGDDFDEKIVQWLVNEFKNDEGIDLTQDNQALQRLTEAAEKAKVELSTLTQSSINLPFISVTPEGPKHLEKDLTRAKFEELCSD 305          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DICT6 (Chaperone protein dnaK OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 57/117 (48.72%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL----YEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L I EG+FEV ATAG+  LGG+DFD R+VN  V+ F  ++  ++  +  AL+RL  A E+AK  LSS  QT I +  +       +    T+TRA+FEEL  D
Sbjct:  166 LVFDLGGGTFDVSILEIGEGVFEVIATAGNNRLGGDDFDERIVNWLVEMFMEEHGINLKEDRTALQRLFEAAEKAKIELSSKLQTEINLPFIAMKGNTPLHISVTLTRAKFEELTYD 282          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DESDA (Chaperone protein dnaK OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 45/88 (51.14%), Postives = 68/88 (77.27%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 269
            +FDLGGGTFD+S+L + + + EV+AT GDT LGGEDFD R++N  V+EFK++N  D+S +  AL+RL+ A E+AK+ LS++ +T + +
Sbjct:  190 VFDLGGGTFDISILEVGDNVVEVRATNGDTFLGGEDFDQRVINFLVEEFKKENGIDLSKDSMALQRLKEAAEKAKKDLSTSMETEVNL 277          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CYTH3 (Chaperone protein dnaK OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 53/113 (46.90%), Postives = 77/113 (68.14%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL--YEGI--DFYSTITRARFEEL 332
            +FDLGGGTFDVS+L + +G+FEVK+T GD HLGG++FD  +++    EFK +   D+  +P AL+RL+ A E+AK  LSS+A T I +  +    G+      T+TRA+FE+L
Sbjct:  190 VFDLGGGTFDVSVLELGDGVFEVKSTNGDVHLGGDNFDEVIIDWLAGEFKSEEGLDLRQDPMALQRLKEAAEKAKIELSSSASTEINLPYIMPVNGMPKHLVKTLTRAKFEQL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7Q_YEAST (Heat shock protein SSQ1, mitochondrial OS=Saccharomyces cerevisiae GN=SSQ1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 49/115 (42.61%), Postives = 75/115 (65.22%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKN----KKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNM 338
            ++DLGGGTFD+S+L IE+G+FEV+AT GDTHLGGEDFDN +VN+ +  F  +N    +++I+ N   ++RL+   ERAK  LS   +T IE+  +Y+       +T    + + +
Sbjct:  232 VYDLGGGTFDISILDIEDGVFEVRATNGDTHLGGEDFDNVIVNYIIDTFIHENPEITREEITKNRETMQRLKDVSERAKIDLSHVKKTFIELPFVYKSKHLRVPMTEEELDNMTL 346          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7E_DROME (Heat shock 70 kDa protein cognate 5 OS=Drosophila melanogaster GN=Hsc70-5 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.222e-21
Identity = 50/91 (54.95%), Postives = 68/91 (74.73%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL 278
            ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFDN +VN  V EFK+ +  DI  +  A++RL+ A E+AK  LSS+ QT I +  L
Sbjct:  242 VYDLGGGTFDISILEIQKGVFEVKSTNGDTLLGGEDFDNHIVNFLVAEFKKDSGIDIRKDNIAMQRLKEAAEKAKCELSSSQQTDINLPYL 332          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_MYCS29.357e-2244.92Chaperone protein dnaK OS=Mycobacterium smegmatis ... [more]
DNAK_MYCPA9.357e-2245.76Chaperone protein dnaK OS=Mycobacterium paratuberc... [more]
DNAK_MYCGI9.357e-2244.92Chaperone protein dnaK OS=Mycobacterium gilvum (st... [more]
DNAK_FUSNN9.357e-2244.74Chaperone protein dnaK OS=Fusobacterium nucleatum ... [more]
DNAK_EMIHU9.357e-2247.86Chaperone protein dnaK OS=Emiliania huxleyi GN=dna... [more]
DNAK_DICT69.357e-2248.72Chaperone protein dnaK OS=Dictyoglomus thermophilu... [more]
DNAK_DESDA9.357e-2251.14Chaperone protein dnaK OS=Desulfovibrio desulfuric... [more]
DNAK_CYTH39.357e-2246.90Chaperone protein dnaK OS=Cytophaga hutchinsonii (... [more]
HSP7Q_YEAST1.222e-2142.61Heat shock protein SSQ1, mitochondrial OS=Saccharo... [more]
HSP7E_DROME1.222e-2154.95Heat shock 70 kDa protein cognate 5 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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