CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:710..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 2.363e-49
Identity = 95/113 (84.07%), Postives = 104/113 (92.04%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD R+VNHF  EF+RK KKD+  +PRALRRLRTACERAKRTLSS AQTTIE+DSL+EG+DF ++ITRARFEEL MD
Sbjct:  202 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDERLVNHFANEFQRKYKKDLKTSPRALRRLRTACERAKRTLSSAAQTTIELDSLFEGVDFATSITRARFEELCMD 314
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.363e-49
Identity = 93/113 (82.30%), Postives = 106/113 (93.81%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLL+I++G+FEV ATAGDTHLGGEDFDNR+VNHFV EFKRK+KKDI GN RALRRLRTACERAKRTLSS++Q ++EIDSLY+GIDFY++ITRARFEEL  D
Sbjct:  197 LIFDLGGGTFDVSLLSIDDGVFEVLATAGDTHLGGEDFDNRLVNHFVDEFKRKHKKDIMGNQRALRRLRTACERAKRTLSSSSQASVEIDSLYDGIDFYTSITRARFEELCSD 309
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.363e-49
Identity = 94/113 (83.19%), Postives = 106/113 (93.81%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q  +EIDSLYEGIDFY++ITRARFEEL  D
Sbjct:  198 LIFDLGGGTFDVSVLTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSLYEGIDFYTSITRARFEELCAD 310
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.086e-49
Identity = 94/113 (83.19%), Postives = 105/113 (92.92%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS LTIEEGIFEVK+TAGDTHLGGEDFDNR+VNHF  EFKRK+KKD+S N RALRRLRTACERAKRTLSS+AQT+IEIDSL+EGIDF+++ TRARFEE+  D
Sbjct:  194 LIFDLGGGTFDVSFLTIEEGIFEVKSTAGDTHLGGEDFDNRLVNHFSNEFKRKHKKDLSDNARALRRLRTACERAKRTLSSSAQTSIEIDSLFEGIDFFTSNTRARFEEVGQD 306
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.086e-49
Identity = 93/113 (82.30%), Postives = 107/113 (94.69%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI++GIFEV+ATAGDTHLGGEDFDNR+VNHFV+EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q ++EIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  196 LIFDLGGGTFDVSILTIDDGIFEVEATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSD 308
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.031e-49
Identity = 92/113 (81.42%), Postives = 105/113 (92.92%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFE+K+TAGDTHLGGEDFDNRMV+H  +EFKRK+KKDI  N RA+RRLRTACERAKRTLSS+ Q +IEIDSLYEG+DFY++ITRARFEELN D
Sbjct:  199 LIFDLGGGTFDVSILTIEDGIFELKSTAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNAD 311
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 4.031e-49
Identity = 93/113 (82.30%), Postives = 107/113 (94.69%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q ++EIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  196 LIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSD 308
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_BLAEM (Heat shock 70 kDa protein OS=Blastocladiella emersonii GN=HSP70 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.031e-49
Identity = 97/113 (85.84%), Postives = 106/113 (93.81%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLLTIE+GIFEVKATAGDTHLG EDFDNR+VNHFVQEFKRK+KKD+SG  R  RRLRTACERAKRTLSS+AQT+IEIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  200 LIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGAEDFDNRLVNHFVQEFKRKHKKDLSGKARP-RRLRTACERAKRTLSSSAQTSIEIDSLFEGIDFYTSITRARFEELCAD 311
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 4.031e-49
Identity = 93/113 (82.30%), Postives = 107/113 (94.69%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q ++EIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  196 LIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSD 308
[Close]
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.031e-49
Identity = 93/113 (82.30%), Postives = 106/113 (93.81%), Query Frame = 3 
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+VNHFV+EFKRK+KKD S N RA+RRLRTACERAKRTLSS+ Q ++EIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  196 LIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDYSQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSD 308
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_CHLRE2.363e-4984.07Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HS7C3_DICDI2.363e-4982.30Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HS71L_BOVIN2.363e-4983.19Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP70_CLAHE3.086e-4983.19Heat shock 70 kDa protein OS=Cladosporium herbarum... [more]
HS71B_BOSMU3.086e-4982.30Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HSP72_MOUSE4.031e-4981.42Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP71_RAT4.031e-4982.30Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_BLAEM4.031e-4985.84Heat shock 70 kDa protein OS=Blastocladiella emers... [more]
HS71B_MOUSE4.031e-4982.30Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_PIG4.031e-4982.30Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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