CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:710..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 4.031e-49
Identity = 93/113 (82.30%), Postives = 107/113 (94.69%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+HFV+EFKRK+KKDIS N RA+RRLRTACERAKRTLSS+ Q ++EIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  196 LIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7D_DROME (Heat shock 70 kDa protein cognate 4 OS=Drosophila melanogaster GN=Hsc70-4 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 5.264e-49
Identity = 92/113 (81.42%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+L+I++GIFEVK+TAGDTHLGGEDFDNR+V HFVQEFKRK+KKD++ N RALRRLRTACERAKRTLSS+ Q +IEIDSL+EG DFY++ITRARFEELN D
Sbjct:  196 LIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVTHFVQEFKRKHKKDLTTNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGTDFYTSITRARFEELNAD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.264e-49
Identity = 91/113 (80.53%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+L IE+GIFE+K+TAGDTHLGGEDFDNR+VNHFV EFKRK+KKDIS N RALRRLRTACERAKRTLS++ Q ++EIDSL++GIDFY++ITRARFEEL +D
Sbjct:  196 LIFDLGGGTFDVSILAIEDGIFEIKSTAGDTHLGGEDFDNRLVNHFVDEFKRKHKKDISSNKRALRRLRTACERAKRTLSASTQASVEIDSLFDGIDFYTSITRARFEELCID 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.875e-49
Identity = 92/113 (81.42%), Postives = 105/113 (92.92%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDN MV+H  +EFKRK+KKDI+ N RA+RRLRTACERAKRTLSS+ Q +IEIDSLYEG+DFY++ITRARFEELN D
Sbjct:  199 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNSMVSHLAEEFKRKHKKDIAPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNAD 311          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_CHICK (Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.173e-48
Identity = 92/113 (81.42%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVN FV+EFK K+K+D +GN RA+RRLRTACERA+RTLSS+ Q +IEIDSL+EGIDFY++ITRARFEELN D
Sbjct:  199 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNRFVEEFKGKHKRDNAGNKRAVRRLRTACERARRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNAD 311          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.532e-48
Identity = 90/113 (79.65%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI+ G+FEVKATAGDTHLGGEDFDNR+VNHF++EF+RK++KD+S N RALRRLRTACERAKRTLSS+ Q T+EIDSL+EG+DFY++ITRARFEEL  D
Sbjct:  198 LIFDLGGGTFDVSVLTIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHRKDLSRNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCSD 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 1.532e-48
Identity = 90/113 (79.65%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+L+I+ G+FEVKATAGDTHLGGEDFDNR+VNHF++EF+RK+ KD+SGN RALRRLRTACERAKRTLSS+ Q T+EIDSL+EG+DFY++ITRARFEEL  D
Sbjct:  198 LIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCSD 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP76_SAGOE (Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 90/113 (79.65%), Postives = 106/113 (93.81%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+L+I+ G+FEVKATAGDTHLGGEDFDNR+VNHFV+EF+RK++KD+S N RALRRLRTACERAKRTLSS+ Q T+EIDSL+EG+DFY++ITRARFEEL  D
Sbjct:  198 LIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFVEEFRRKHRKDLSWNKRALRRLRTACERAKRTLSSSTQATLEIDSLFEGVDFYTSITRARFEELCSD 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_PLEWA (Heat shock 70 kDa protein OS=Pleurodeles waltlii GN=HSP70 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.000e-48
Identity = 93/113 (82.30%), Postives = 105/113 (92.92%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTI++GIFEVKATAGDTHLGGEDFDNRMVNHF + FKRK+KKDI+ N RA+RRLRTACERAKRTLSS+ Q +IEIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  198 LIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRMVNHFHEPFKRKHKKDITKNKRAVRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELCAD 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 3.412e-48
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEG-IFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+L+I+EG +FEVKATAGDTHLGGEDFDNR+VNHF +EFKRK+K DI GN RALRRLRTACERAKRTLSS+ + ++EID+L+EGIDFYS I+RARFEELNMD
Sbjct:  196 LIFDLGGGTFDVSVLSIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFAEEFKRKHKSDIKGNARALRRLRTACERAKRTLSSSTEASLEIDALHEGIDFYSKISRARFEELNMD 309          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71A_MOUSE4.031e-4982.30Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP7D_DROME5.264e-4981.42Heat shock 70 kDa protein cognate 4 OS=Drosophila ... [more]
HSP70_HYDMA5.264e-4980.53Heat shock 70 kDa protein OS=Hydra magnipapillata ... [more]
HSP72_BOVIN6.875e-4981.42Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP70_CHICK1.173e-4881.42Heat shock 70 kDa protein OS=Gallus gallus PE=3 SV... [more]
HSP76_PIG1.532e-4879.65Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP76_HUMAN1.532e-4879.65Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]
HSP76_SAGOE2.000e-4879.65Heat shock 70 kDa protein 6 OS=Saguinus oedipus GN... [more]
HSP70_PLEWA2.000e-4882.30Heat shock 70 kDa protein OS=Pleurodeles waltlii G... [more]
HSP7B_DROME3.412e-4880.70Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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