CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:710..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.412e-48
Identity = 93/113 (82.30%), Postives = 104/113 (92.04%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD+R+VN FV EFKRK KKD++ N R+LRRLRTACERAKRTLSS  QTT+EIDSL +GID+Y++ITRA+FEEL MD
Sbjct:  203 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNFFVSEFKRKYKKDVTSNARSLRRLRTACERAKRTLSSGTQTTVEIDSLIDGIDYYASITRAKFEELCMD 315          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.412e-48
Identity = 94/113 (83.19%), Postives = 105/113 (92.92%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLG EDFDNRMVNHFV EFKR +KKD++ NPRALRRLRTACERAKRTLSS++Q +IEIDSL+EGIDFY+ ITRARFEEL  D
Sbjct:  196 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLG-EDFDNRMVNHFVAEFKRNDKKDLASNPRALRRLRTACERAKRTLSSSSQASIEIDSLFEGIDFYTNITRARFEELCAD 307          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 5.820e-48
Identity = 92/113 (81.42%), Postives = 103/113 (91.15%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMV+HFV+EF++K  KDI  N RALRRLRTACERAKRTLSS+AQT +EIDSL +G DFY+ ITRARFEELN D
Sbjct:  194 LIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVDHFVKEFQKKYNKDIRSNKRALRRLRTACERAKRTLSSSAQTNLEIDSLCDGTDFYTVITRARFEELNAD 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP77_HUMAN (Putative heat shock 70 kDa protein 7 OS=Homo sapiens GN=HSPA7 PE=5 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 1.297e-47
Identity = 89/113 (78.76%), Postives = 104/113 (92.04%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+L+I+ G+FEVKATAGDTHLGGEDFDNR+VNHF++EF+RK+ KD+SGN RALRRLRTACERAKRT SS+ Q T+EIDSL+EG+DFY +ITRARFEEL  D
Sbjct:  198 LIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHGKDLSGNKRALRRLRTACERAKRTPSSSTQATLEIDSLFEGVDFYKSITRARFEELCSD 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_ACHKL (Heat shock 70 kDa protein OS=Achlya klebsiana GN=HSP70 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 1.693e-47
Identity = 92/110 (83.64%), Postives = 103/110 (93.64%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEEL 332
            LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR+V+HF  EFKRK++KD++ N RALRRLRTACERAKRTLSS+AQ  IEIDSL++GIDF STITRARFE++
Sbjct:  198 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVDHFTAEFKRKHRKDMTQNQRALRRLRTACERAKRTLSSSAQAYIEIDSLFDGIDFNSTITRARFEDM 307          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 3.773e-47
Identity = 91/113 (80.53%), Postives = 105/113 (92.92%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLL+I+EG+FEVKATAGDTHLGGEDFD+R+VN   +EFKRKNKKD++ N R+LRRLRTA ERAKRTLSS+AQT+IEIDSL+EGIDFY++ITRARFEEL  D
Sbjct:  194 LIFDLGGGTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDSRLVNFLAEEFKRKNKKDLTTNQRSLRRLRTAAERAKRTLSSSAQTSIEIDSLFEGIDFYTSITRARFEELCAD 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.773e-47
Identity = 96/114 (84.21%), Postives = 100/114 (87.72%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTL-SSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLLTIEEGI+EVKA   DTHLGGEDFDNR+VN FV EF   NKKDI     ALRRLRTACERAKRTL SSTAQTTIEIDSLYEG+DFY+TITRARFEELNMD
Sbjct:  200 LIFDLGGGTFDVSLLTIEEGIYEVKAPKSDTHLGGEDFDNRLVNRFVTEFLTNNKKDIRWECEALRRLRTACERAKRTLSSSTAQTTIEIDSLYEGVDFYTTITRARFEELNMD 313          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 4.927e-47
Identity = 90/113 (79.65%), Postives = 103/113 (91.15%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVSLL+I+EG+FEVKATAGDTHLGGEDFDNR+VNH   EFKRK KKDIS N R+LRRLRTA ERAKR LSS++QT+IEIDSL+EG+DFY+++TRARFEEL  D
Sbjct:  194 LIFDLGGGTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDNRLVNHLATEFKRKTKKDISNNQRSLRRLRTAAERAKRALSSSSQTSIEIDSLFEGMDFYTSLTRARFEELCAD 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_ECHGR (Heat shock cognate 70 kDa protein OS=Echinococcus granulosus GN=HSP70 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.404e-47
Identity = 92/114 (80.70%), Postives = 106/114 (92.98%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNK-KDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFDLGGGTFDVS+L+IE+GIFEVK+TAGDTHLGGEDFD+R+VNHFV+EFKRK+K KD++ N RA+RRLRTACERAKRTLSS+AQ  IEIDSL EGIDFY++ITRARFEEL  D
Sbjct:  197 LIFDLGGGTFDVSILSIEDGIFEVKSTAGDTHLGGEDFDSRLVNHFVEEFKRKHKGKDLTTNKRAVRRLRTACERAKRTLSSSAQANIEIDSLLEGIDFYTSITRARFEELCSD 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_BRELC (Heat shock 70 kDa protein OS=Bremia lactucae GN=HSP70 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.404e-47
Identity = 91/110 (82.73%), Postives = 103/110 (93.64%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEEL 332
            LIFDLGGGTFDVSLL+IEEGIFEVK+TA DTHLGGEDFDNR+V+HF QEFKRK++KDI+ N RALRRLRTACERAKRTLSS+AQ  IEIDSL++GIDF STITRARFE++
Sbjct:  198 LIFDLGGGTFDVSLLSIEEGIFEVKSTARDTHLGGEDFDNRLVDHFTQEFKRKHRKDITENQRALRRLRTACERAKRTLSSSAQAYIEIDSLFDGIDFNSTITRARFEDM 307          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_PYRSA3.412e-4882.30Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
HSP70_BRUMA3.412e-4883.19Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]
HSP70_SCHMA5.820e-4881.42Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HSP77_HUMAN1.297e-4778.76Putative heat shock 70 kDa protein 7 OS=Homo sapie... [more]
HSP70_ACHKL1.693e-4783.64Heat shock 70 kDa protein OS=Achlya klebsiana GN=H... [more]
HSP74_YEAST3.773e-4780.53Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP70_DAUCA3.773e-4784.21Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]
HSP73_YEAST4.927e-4779.65Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP70_ECHGR8.404e-4780.70Heat shock cognate 70 kDa protein OS=Echinococcus ... [more]
HSP70_BRELC8.404e-4782.73Heat shock 70 kDa protein OS=Bremia lactucae GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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