CX288744

Overview
NameCX288744
Unique NameCX288744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10840 contig Ccv1_Contig10840:213..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 9.594e-54
Identity = 99/152 (65.13%), Postives = 119/152 (78.29%), Query Frame = 1
Query:   70 YCRRWYNPLRRK--PFDEPSPDVLRHWIDADPNPISSQ-ERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRE 516
            Y RRW NPL R+  P   PS  + R WID+D  P+S   ERF+VVSYNILGD N+  HR+LY NV   Y+KW  RKRLIC+ELI LNPDII MQEVD+YFD+ ++MEKAGYAG YKRRTGDNVDGCAMFWKAD+F +LE+ +IEF +FG+R+
Sbjct:   68 YSRRWQNPLPRRQHPDQIPSSQIARDWIDSDTTPVSQALERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEELIRLNPDIISMQEVDKYFDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRD 219          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.648e-29
Identity = 60/139 (43.17%), Postives = 92/139 (66.19%), Query Frame = 1
Query:   97 RRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            RR+  ++ S  V R W+ +  N  +  ++  +VSYN+LG  NA  H DLY NV  ++++W+RRK LIC+E+   N  I+C+QEVDR+ D+  +++  G+ G +K RTG+  DGCA+FWK + F LL+   IEF +FG+R
Sbjct:   71 RRRTKEKISSSVEREWVFSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQHIEFDKFGMR 209          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4F_ARATH (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 57/141 (40.43%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   97 RRKPFDEPSPDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKH-RDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLRE 516
            R++P  +PS    R W  A   P    E+F V+SYNIL D  A  H R LY ++    + W  RK  +  EL   + DI+C+QEVD++ D+   M+  GY+  +K RTG+ VDGCA+FW++++F+L+ + SI+F + GLR+
Sbjct:  156 RQRPRSKPSD--YREWEYAKTPPSPGSEKFVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRTGNAVDGCAIFWRSNRFKLVHEESIQFNQLGLRD 294          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: CCR4_CRYNE (Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Cryptococcus neoformans GN=CCR4 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 55/149 (36.91%), Postives = 80/149 (53.69%), Query Frame = 1
Query:  118 PSPDVLRHWIDADPN---PISS-QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVD--RYFDILNVM-EKAGYAGCYKRRTGDN---------VDGCAMFWKADKFRLLEQTSIEFKEFGLRE 516
            P P   R WID + +   P S  QE FSV++YNIL    +F     Y       + W+ RKRL+ +E++  + D++C+QE+D  +Y D    M +K GY G +  R+            VDGCA FWK +KFRL+E   IEF +  L++
Sbjct:  363 PPPPPERQWIDLETDVDTPTSGKQESFSVLTYNILCA--SFAPATTYSYTPSWALDWDYRKRLLLEEIVTASADVVCLQEIDCKQYADYFYPMLKKEGYEGQHYPRSRAKTMSVDEQKLVDGCATFWKEEKFRLVETQVIEFNQLALQK 509          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGEL_DROME (Protein angel OS=Drosophila melanogaster GN=angel PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1
Query:  115 EPSPDVLRHWIDA-------DPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILNVM---------EKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIE 492
            E S D  R W          DP+  SS   F VVSYNIL      +H  LY  + +E++ W RR++ + +EL+ L+PDI+C+QE+   FD L V+         +K  Y   YK++TG   DGCA+ + + KF LL+  ++E
Sbjct:   41 ESSHDRNRRWTSLGNQAEGRDPHKCSS---FKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQRRQQNLLRELLKLDPDILCLQEMQ--FDHLPVLVQRLRMGNGKKLAYV--YKKKTGCRTDGCAIVYDSSKFELLDHQAVE 175          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGE1_RAT (Protein angel homolog 1 OS=Rattus norvegicus GN=Angel1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   94 LRRKPFDEPSPDVL-RHWIDADPNPISS--------QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            L+  P + P  ++L R W D    P +         Q +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +   G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL
Sbjct:  203 LQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGL 353          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGE1_MOUSE (Protein angel homolog 1 OS=Mus musculus GN=Angel1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.147e-14
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 1
Query:   94 LRRKPFDEPSPDVL-RHWIDADPNPISS--------QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            L+  P + P  ++L R W D    P +         Q +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +   G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL
Sbjct:  203 LQPPPMEIPYHEILWREWEDFSTQPDAQGLEAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGL 353          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: NOCT_RAT (Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4l PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.268e-13
Identity = 44/140 (31.43%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  124 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   R ++D   +  SS     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD L  ++ + GY G         C      +  DGCA+F+   +F+L+  T+I      L+
Sbjct:   47 PRYQRDFVDLRTDCSSSHPPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQSRFKLINSTNIRLTAMTLK 185          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: ANGE1_HUMAN (Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 47/136 (34.56%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  136 RHWIDADPNPISS--------QERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEV--DRYFDILN-VMEKAGYAGCYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGL 510
            R W D    P +         Q +F+++SYNIL      +  +LY +   + + WN R   + QE    +PDI+C+QEV  D Y++ L   +   G+   YKRRTG   DGCA+ +K  +FRLL  + +E+   GL
Sbjct:  221 REWEDFSTQPDAQGLKAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFVNLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGL 356          
BLAST of CX288744 vs. ExPASy Swiss-Prot
Match: NOCT_MOUSE (Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.162e-13
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  124 PDVLRHWIDADPNPISSQERFSVVSYNILGDKNAFKHRDLYQNVRYEYMKWNRRKRLICQELIGLNPDIICMQEVDRYFDILN-VMEKAGYAG---------CYKRRTGDNVDGCAMFWKADKFRLLEQTSIEFKEFGLR 513
            P   R ++D   +  SS     V+ +NIL      + +D +     E +KW  RK LI +E++   PDI+C+QEVD YFD    ++ + GY G         C      +  DGCA+F+  ++F+L+  T+I      L+
Sbjct:  121 PRYQRDFVDLRTDCSSSHSPIRVMQWNILAQALG-EGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLISSTNIRLTAMTLK 259          
The following BLAST results are available for this feature:
BLAST of CX288744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CCR4C_ARATH9.594e-5465.13Carbon catabolite repressor protein 4 homolog 3 OS... [more]
CCR4E_ARATH1.648e-2943.17Carbon catabolite repressor protein 4 homolog 5 OS... [more]
CCR4F_ARATH3.556e-2440.43Carbon catabolite repressor protein 4 homolog 6 OS... [more]
CCR4_CRYNE2.729e-1636.91Glucose-repressible alcohol dehydrogenase transcri... [more]
ANGEL_DROME2.729e-1636.62Protein angel OS=Drosophila melanogaster GN=angel ... [more]
ANGE1_RAT1.147e-1433.77Protein angel homolog 1 OS=Rattus norvegicus GN=An... [more]
ANGE1_MOUSE1.147e-1433.77Protein angel homolog 1 OS=Mus musculus GN=Angel1 ... [more]
NOCT_RAT1.268e-1331.43Nocturnin (Fragment) OS=Rattus norvegicus GN=Ccrn4... [more]
ANGE1_HUMAN1.656e-1334.56Protein angel homolog 1 OS=Homo sapiens GN=ANGEL1 ... [more]
NOCT_MOUSE2.162e-1330.71Nocturnin OS=Mus musculus GN=Ccrn4l PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC02003H09SK IF1 Citrus clementina cDNA clone C02003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288744 ID=CX288744; Name=CX288744; organism=Citrus clementina; type=EST; length=517bp
AACACCATTTCCTGTGGCTTCAATGGTCCCACCACACATTCCTCATCATC
ATCGCCGTCAACTCGTTCGTACTGCCGTCGATGGTACAACCCTCTCCGAC
GTAAGCCGTTCGATGAGCCTTCTCCTGACGTCCTCCGCCACTGGATCGAC
GCTGATCCTAATCCAATTTCATCTCAAGAGAGATTCTCGGTCGTGTCATA
TAACATATTGGGAGATAAAAATGCTTTCAAACATAGAGATTTATATCAAA
ATGTTCGGTATGAATACATGAAATGGAACCGTCGCAAAAGGTTAATATGC
CAAGAGTTGATTGGATTGAACCCGGATATTATCTGTATGCAAGAGGTGGA
CAGGTATTTTGATATTCTGAATGTTATGGAGAAAGCGGGATATGCTGGTT
GTTACAAGCGGCGCACTGGGGATAACGTTGATGGTTGTGCGATGTTTTGG
AAAGCTGATAAGTTTCGGTTATTAGAGCAAACAAGCATTGAATTTAAAGA
GTTTGGCCTTCGTGAAA
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