CX288800

Overview
NameCX288800
Unique NameCX288800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10330 contig Ccv1_Contig10330:838..1348. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG1_BOVIN (Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.446e-11
Identity = 36/170 (21.18%), Postives = 86/170 (50.59%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFEPSSMMAKCD---PRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWY 499
            R+ G +N D+     +L+P PR+HF+++ Y P+ + +  A   + +V ++     +P ++M         +  Y+A   + +G+V P  V+ ++  I+ ++   F+ W P   +  ++ + P +     ++ +     M++N TS++ +F R   ++D +  + AF+  +
Sbjct:  244 RYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGL-----MMANHTSISSLFERTCRQYDKLRKREAFLEQF 408          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 40/181 (22.10%), Postives = 91/181 (50.28%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE------QLSVAEITNSAFEPSSMMAKC-----DPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA----KRAFVHWY 499
            R+ G +N D+     +L+P PR HF+++ Y P ++AE A  +      + +V ++     +P ++M        D  + KY++   + +G+V P  V+ ++  I+ ++   F++W P   +  ++ + P V     ++ +     M++N TSV  +F+++   ++ +      ++AF+  Y
Sbjct:  244 RYPGYMNNDLVGLVASLIPTPRCHFLMTGYTP-LTAENAAGQVTSNIRKTTVLDVMRRLLQPKNIMVSTHTKSRDIANAKYISILNIIQGEVDPSQVHKSLQRIRERKQANFIEWGPASIQVALSKKSPYVQTAHRVSGL-----MLANHTSVRHLFNKVLRDYEKLMGPKQERQAFMQAY 418          
BLAST of CX288800 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 35/166 (21.08%), Postives = 84/166 (50.60%), Query Frame = 2
Query:    2 RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHE--QLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVH 493
            R+ G +N D+     +LVP PR HF+++ Y P +S ++ ++   + +V ++     +  ++M     + G YM+   + +GDV P  V+ ++  I+ ++   F+ W P   +  ++ + P +  G  ++ +     M++N T +  +F  +  ++     + A+++
Sbjct:  241 RYPGYMNNDMVGLIASLVPTPRCHFLMTGYTP-LSLDQKFNSVRKTTVLDVMRRLLQTKNIMVTGAVKKGAYMSILNVIQGDVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSKKSPYIDSGHKVSGL-----MLANHTGIRSIFKVLYDQYRTFRKRDAYMN 400          
The following BLAST results are available for this feature:
BLAST of CX288800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TBG1_BOVIN7.446e-1121.18Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 ... [more]
TBG_CHLRE9.725e-1122.10Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG1_EUPOC9.725e-1121.08Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]

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Properties
Property NameValue
Genbank descriptionC02004E09SK IF1 Citrus clementina cDNA clone C02004E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288800 ID=CX288800; Name=CX288800; organism=Citrus clementina; type=EST; length=511bp
GAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATTCCAAACCAACT
TGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCTATGCACCAGTC
ATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTTGCTGAGATCAC
CAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATGTGATCCTCGTC
ATGGCAAGTACATGGCTTGCTGCCTCATGTACCGTGGTGATGTTGTGCCC
AAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAGCGTACAATCCA
ATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTATCAACTACCAGC
CACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGCAAAGGGCTGTT
TGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTCTCTCGCATTGA
CCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGTCCACTGGTATG
TTGGCGAGGGT
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