CX288868

Overview
NameCX288868
Unique NameCX288868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig158 contig Ccv1_Contig158:1..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_MOUSE (Nascent polypeptide-associated complex subunit alpha OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 130          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_HUMAN (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 130          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_CHILA (Nascent polypeptide-associated complex subunit alpha OS=Chinchilla lanigera PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 130          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_BOVIN (Nascent polypeptide-associated complex subunit alpha OS=Bos taurus GN=NACA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 130          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACAM_MOUSE (Nascent polypeptide-associated complex subunit alpha, muscle-specific form OS=Mus musculus GN=Naca PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct: 2051 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 2102          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_CAEEL (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis elegans GN=Y65B4BR.5 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.593e-15
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3
Query:  324 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            KLG+K VTGVSRV I+++KNILF I+KPDVFKSP S+TY+IFGEAKIED
Sbjct:   68 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIED 116          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_CAEBR (Nascent polypeptide-associated complex subunit alpha OS=Caenorhabditis briggsae GN=CBG05114 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.593e-15
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3
Query:  324 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            KLG+K VTGVSRV I+++KNILF I+KPDVFKSP S+TY+IFGEAKIED
Sbjct:   70 KLGLKQVTGVSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIED 118          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGSVM 536
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F +P   S +
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSAL 1436          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPDMGSVM 536
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F +P   S +
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSAL 1493          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_DANRE (Nascent polypeptide-associated complex subunit alpha OS=Danio rerio GN=naca PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            AM KLG++ V GV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   79 AMSKLGLRQVAGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 130          
The following BLAST results are available for this feature:
BLAST of CX288868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_MOUSE1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACA_HUMAN1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACA_CHILA1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACA_BOVIN1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACAM_MOUSE1.985e-1571.15Nascent polypeptide-associated complex subunit alp... [more]
NACA_CAEEL2.593e-1577.55Nascent polypeptide-associated complex subunit alp... [more]
NACA_CAEBR2.593e-1577.55Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE3.386e-1552.70NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACAD_HUMAN3.386e-1552.70NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_DANRE7.544e-1569.23Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02006C12SK IF1 Citrus clementina cDNA clone C02006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288868 ID=CX288868; Name=CX288868; organism=Citrus clementina; type=EST; length=547bp
AAATAAAGAAGCAGCGGCAACCAAACCTAACAGAACAAAGTTATCCCTAT
CTATCGAGGCTAAACTAGAGAAAGCTTATCAATTTTATCAAAATGTCGCC
ACCAGCTCCCATCGTTGAGACACCAGTCGAGGAACCTGAAAAAATTAAGC
CTCAGGATGAGGATGAGCCTGTAGTTGAAGATGTTAAGGACGACGAGGAA
GAAGATGATGACCACGACAATGACGATGATGACGAGGACGACGATGACAA
CAAAGACGATGGAGCTCAAGGTGGGAGTTCAAAGCAGAGCAGAAGTGAGA
AAAAGAGCCGCAAGGCAATGCTGAAGTTGGGCATGAAACCTGTAACAGGA
GTTAGCAGGGTAACCATCAAGAGAACCAAAAATATACTATTTTTCATCTC
AAAGCCTGATGTTTTCAAGAGCCCAAATTCTGAAACATACGTCATATTTG
GGGAAGCCAAAATAGAGGATTTGAGCACCCAGCTGCAGACACAGGCTGCC
CAGCAGTTCACGATGCCTGACATGGGATCGGTGATGGCGAAACCAGA
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