CX288868

Overview
NameCX288868
Unique NameCX288868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig158 contig Ccv1_Contig158:1..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_DROME (Nascent polypeptide-associated complex subunit alpha OS=Drosophila melanogaster GN=Nacalpha PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 3
Query:  318 MLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFTMPD 521
            MLKLG+K + GV+RVTI+++KNILF I+ PDV+K+P+S+TY++FGEAKIED            F  P+
Sbjct:   80 MLKLGLKQIQGVNRVTIRKSKNILFVINNPDVYKNPHSDTYIVFGEAKIEDLSQQAQVAAAEKFKAPE 147          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACP1_HUMAN (Putative nascent polypeptide-associated complex subunit alpha-like protein OS=Homo sapiens GN=NACAP1 PE=5 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.287e-14
Identity = 36/52 (69.23%), Postives = 47/52 (90.38%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A  KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   78 ARFKLGLQQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYMVFGEAKIED 129          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_BABDI (Nascent polypeptide-associated complex subunit alpha OS=Babesia divergens PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.341e-14
Identity = 34/49 (69.39%), Postives = 43/49 (87.76%), Query Frame = 3
Query:  324 KLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            KLGMKPV GV++V IK++K I F ++KPDV+K PNS+TYVIFGEAK+ED
Sbjct:   48 KLGMKPVDGVTKVCIKKSKQIYFVVNKPDVYKLPNSDTYVIFGEAKVED 96          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_PHANO (Nascent polypeptide-associated complex subunit alpha OS=Phaeosphaeria nodorum GN=EGD2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.858e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+ KLG+K + G++RVT++R KNILF I++PDV+KSP+S T++IFGEAKIED
Sbjct:   57 AIAKLGLKHIDGITRVTLRRPKNILFVINQPDVYKSPSSNTWIIFGEAKIED 108          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_NEOFI (Nascent polypeptide-associated complex subunit alpha OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_EMENI (Nascent polypeptide-associated complex subunit alpha OS=Emericella nidulans GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_COCIM (Nascent polypeptide-associated complex subunit alpha OS=Coccidioides immitis GN=EGD2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   57 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 108          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_ASPOR (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus oryzae GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   54 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 105          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_ASPNC (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_ASPFU (Nascent polypeptide-associated complex subunit alpha OS=Aspergillus fumigatus GN=egd2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.061e-13
Identity = 33/52 (63.46%), Postives = 46/52 (88.46%), Query Frame = 3
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+ KLG+K V G++RVT++R KNILF I++PDV++SP+S T++IFGEAKIED
Sbjct:   55 AIGKLGLKHVPGITRVTLRRPKNILFVINQPDVYRSPSSNTWIIFGEAKIED 106          
The following BLAST results are available for this feature:
BLAST of CX288868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_DROME9.853e-1552.94Nascent polypeptide-associated complex subunit alp... [more]
NACP1_HUMAN1.287e-1469.23Putative nascent polypeptide-associated complex su... [more]
NACA_BABDI8.341e-1469.39Nascent polypeptide-associated complex subunit alp... [more]
NACA_PHANO1.858e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_NEOFI7.061e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_EMENI7.061e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_COCIM7.061e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPOR7.061e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPNC7.061e-1363.46Nascent polypeptide-associated complex subunit alp... [more]
NACA_ASPFU7.061e-1363.46Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02006C12SK IF1 Citrus clementina cDNA clone C02006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288868 ID=CX288868; Name=CX288868; organism=Citrus clementina; type=EST; length=547bp
AAATAAAGAAGCAGCGGCAACCAAACCTAACAGAACAAAGTTATCCCTAT
CTATCGAGGCTAAACTAGAGAAAGCTTATCAATTTTATCAAAATGTCGCC
ACCAGCTCCCATCGTTGAGACACCAGTCGAGGAACCTGAAAAAATTAAGC
CTCAGGATGAGGATGAGCCTGTAGTTGAAGATGTTAAGGACGACGAGGAA
GAAGATGATGACCACGACAATGACGATGATGACGAGGACGACGATGACAA
CAAAGACGATGGAGCTCAAGGTGGGAGTTCAAAGCAGAGCAGAAGTGAGA
AAAAGAGCCGCAAGGCAATGCTGAAGTTGGGCATGAAACCTGTAACAGGA
GTTAGCAGGGTAACCATCAAGAGAACCAAAAATATACTATTTTTCATCTC
AAAGCCTGATGTTTTCAAGAGCCCAAATTCTGAAACATACGTCATATTTG
GGGAAGCCAAAATAGAGGATTTGAGCACCCAGCTGCAGACACAGGCTGCC
CAGCAGTTCACGATGCCTGACATGGGATCGGTGATGGCGAAACCAGA
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