CX288868

Overview
NameCX288868
Unique NameCX288868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig158 contig Ccv1_Contig158:1..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288868 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 27/52 (51.92%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:  315 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 470
            A+  LG+K V G+ RVT++R +N+L  +S P+V+KSP S+ Y++FGEAK+ED
Sbjct:   33 ALEGLGLKRVQGIQRVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVED 84
The following BLAST results are available for this feature:
BLAST of CX288868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA_CRYNE6.609e-1151.92Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02006C12SK IF1 Citrus clementina cDNA clone C02006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288868 ID=CX288868; Name=CX288868; organism=Citrus clementina; type=EST; length=547bp
AAATAAAGAAGCAGCGGCAACCAAACCTAACAGAACAAAGTTATCCCTAT
CTATCGAGGCTAAACTAGAGAAAGCTTATCAATTTTATCAAAATGTCGCC
ACCAGCTCCCATCGTTGAGACACCAGTCGAGGAACCTGAAAAAATTAAGC
CTCAGGATGAGGATGAGCCTGTAGTTGAAGATGTTAAGGACGACGAGGAA
GAAGATGATGACCACGACAATGACGATGATGACGAGGACGACGATGACAA
CAAAGACGATGGAGCTCAAGGTGGGAGTTCAAAGCAGAGCAGAAGTGAGA
AAAAGAGCCGCAAGGCAATGCTGAAGTTGGGCATGAAACCTGTAACAGGA
GTTAGCAGGGTAACCATCAAGAGAACCAAAAATATACTATTTTTCATCTC
AAAGCCTGATGTTTTCAAGAGCCCAAATTCTGAAACATACGTCATATTTG
GGGAAGCCAAAATAGAGGATTTGAGCACCCAGCTGCAGACACAGGCTGCC
CAGCAGTTCACGATGCCTGACATGGGATCGGTGATGGCGAAACCAGA
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