CX288947

Overview
NameCX288947
Unique NameCX288947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length311
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.594e-29
Identity = 66/103 (64.08%), Postives = 74/103 (71.84%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            KFVVKIP+GMA+EQAAPLLCAGVTV+SPLSHFGLKQ                    AKAMGHHVTVISSS+KKR EA++ LGAD Y++ SD   M E ADSLD
Sbjct:  144 KFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLD 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH_MAIZE (Probable cinnamyl alcohol dehydrogenase OS=Zea mays GN=CAD PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.082e-29
Identity = 68/103 (66.02%), Postives = 71/103 (68.93%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            KFVVKIP G+A EQAAPLLCAGVTV+SPL HFGL                      AKAMGHHVTVISSS KKR EAM+HLGAD YLVSSDA  M  AADSLD
Sbjct:  144 KFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLD 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH_EUCBO (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus botryoides GN=CAD1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 66/103 (64.08%), Postives = 73/103 (70.87%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FVVKIPDG+  EQ A ++CAGVTV+SPL  FGLKQS                   AKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD  GM+EA DSLD
Sbjct:  144 RFVVKIPDGLESEQDA-VMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLD 245          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH_SACOF (Probable cinnamyl alcohol dehydrogenase OS=Saccharum officinarum GN=CAD PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.746e-28
Identity = 66/103 (64.08%), Postives = 70/103 (67.96%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            KFV+KIP G+A EQAAPLLCAGVTV+SPL  FGL                      AKAMGHHVTVISSS KKR EAM+HLGAD YLVSSDA  M  AADSLD
Sbjct:  144 KFVMKIPAGLAPEQAAPLLCAGVTVYSPLKAFGLTTPGLRGAILGLGGVGHMGVKVAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLD 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH_LOLPR (Probable cinnamyl alcohol dehydrogenase OS=Lolium perenne PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.545e-27
Identity = 65/103 (63.11%), Postives = 69/103 (66.99%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            KFVVKIP G+A EQAAPLLCAGVTV+SPL HFGL                      AK+MGHHVTVISSSDKKR EAM+ LGAD YLVSSD   M  A DSLD
Sbjct:  145 KFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLMTPGLRGGILGLGGVGHMGVKVAKSMGHHVTVISSSDKKRAEAMDDLGADDYLVSSDEAQMAAAMDSLD 247          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.813e-26
Identity = 63/103 (61.17%), Postives = 69/103 (66.99%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            KFVVKIP G+A EQAAPLLCAG+TV+SPL HFGL                      AK+MGHHVTVISSS +KR EAM+ LGAD YLVSSDA  M  A DSLD
Sbjct:  144 KFVVKIPAGLAPEQAAPLLCAGLTVYSPLKHFGLMSPGLRGGVLGLGGVGHMGVKVAKSMGHHVTVISSSARKRGEAMDDLGADAYLVSSDAAAMAAAGDSLD 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH7_PICAB (Probable cinnamyl alcohol dehydrogenase 7/8 OS=Picea abies GN=CAD7 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.382e-25
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            FVV+IP+ + LEQAAPLLCAGVTV+SP+ HFG+ +                    AKA G HVTVISSSDKK+ EA+E LGAD YLVS DA  MQEAA+SLD
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLD 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH2_PICAB (Probable cinnamyl alcohol dehydrogenase 2 OS=Picea abies GN=CAD2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.382e-25
Identity = 60/102 (58.82%), Postives = 70/102 (68.63%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            FVV+IP+ + LEQAAPLLCAGVTV+SP+ HFG+ +                    AKA G HVTVISSSDKK+ EA+E LGAD YLVS DA  MQEAA+SLD
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVYSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEALEVLGADAYLVSKDAEKMQEAAESLD 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.633e-24
Identity = 59/102 (57.84%), Postives = 67/102 (65.69%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            FVV+IP+ + LEQAAPLLCAGVTVFSP+ HF + +                    AKA G HVTVISSSDKK+ EAME LGAD YLVS D   M EAA+SLD
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHLGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLD 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.633e-24
Identity = 59/102 (57.84%), Postives = 67/102 (65.69%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            FVV+IP+ + LEQAAPLLCAGVTVFSP+ HF + +                    AKA G HVTVISSSDKK+ EAME LGAD YLVS D   M EAA+SLD
Sbjct:  145 FVVRIPENLPLEQAAPLLCAGVTVFSPMKHFAMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLD 246          
The following BLAST results are available for this feature:
BLAST of CX288947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CADH5_ARATH1.594e-2964.08Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]
CADH_MAIZE2.082e-2966.02Probable cinnamyl alcohol dehydrogenase OS=Zea may... [more]
CADH_EUCBO5.127e-2864.08Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH_SACOF8.746e-2864.08Probable cinnamyl alcohol dehydrogenase OS=Sacchar... [more]
CADH_LOLPR2.545e-2763.11Probable cinnamyl alcohol dehydrogenase OS=Lolium ... [more]
CADH2_ORYSJ2.813e-2661.17Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
CADH7_PICAB2.382e-2558.82Probable cinnamyl alcohol dehydrogenase 7/8 OS=Pic... [more]
CADH2_PICAB2.382e-2558.82Probable cinnamyl alcohol dehydrogenase 2 OS=Picea... [more]
CADH_PINTA2.633e-2457.84Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA2.633e-2457.84Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]

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Properties
Property NameValue
Genbank descriptionC02007C04SK IF1 Citrus clementina cDNA clone C02007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288947 ID=CX288947; Name=CX288947; organism=Citrus clementina; type=EST; length=311bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTGGTATGCAAGAAGCCGCTG
ACTCACTTGAT
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