CX288947

Overview
NameCX288947
Unique NameCX288947
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length311
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGL-KQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FV+ IPDG+  +  APLLCAG+TV+SP+ ++G+ K+S                    KA G  VTVIS S +K  EA++ LGAD +LV++D+  M+EA  ++D
Sbjct:  142 RFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMD 245          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.679e-16
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            ++  KIPDG  LE+AAPLLCAG+TV+SP+    + Q                     KA G  VTVIS+S+ KR EA++ LGAD ++VSSD   M+    SL+
Sbjct:  144 RYCFKIPDGYPLEKAAPLLCAGITVYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESKRKEAIDLLGADNFVVSSDENQMETLKSSLN 246          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FV++ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G  VTVISSS  K  EA++ LGAD +L+SSD   M+ A  ++D
Sbjct:  139 RFVLQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISSSPNKESEAIDVLGADSFLLSSDPEKMKAATGTMD 241          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 40/103 (38.83%), Postives = 59/103 (57.28%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            ++VV+ PD + L+  APLLCAG+TV+SP+ ++G+ +                     KA G  VTVIS+S  K  EA++ LGAD +LVS D   M+ A  ++D
Sbjct:  146 RYVVQFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKFGKAFGLKVTVISTSPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMD 248          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: MTDH_APIGR (Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            F+++ P  + L+  APLLCAG+T +SPL ++GL +                    AKA G  VTVI  S+ KR EA+E LGAD +L++SD   M+ A  SLD
Sbjct:  148 FILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVKMAKAFGAQVTVIDISESKRKEALEKLGADSFLLNSDQEQMKGARSSLD 249          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FV++ P+ +  +  APLLCAG+TV+SP+ ++G+ ++                    KA G  VTVISSS  K  EA+ HLGAD +LV++D   M+ A  ++D
Sbjct:  147 RFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMD 249          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FVV  P+ M L+  APLLCAG+TV++P+ + GL                      A+A G  VTVISSS  K+ EA+E LGAD ++VSS A  M+ A  ++D
Sbjct:  150 RFVVMFPEAMPLDVGAPLLCAGITVYTPMKYHGLNAPGKHVGVLGLGGLGHVAVKFARAFGLKVTVISSSPGKKREALERLGADAFVVSSSAEEMEAARSTMD 252          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 44/102 (43.14%), Postives = 57/102 (55.88%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +V+++P  +  + AAPLLCAGVTV+SP+  +GL                       KA G  VTVISSS  KR EA+E LGAD +L S D  GM  AA ++D
Sbjct:  143 YVLRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNAPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKREEALERLGADAFLSSRDGEGMAAAAATMD 244          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.501e-15
Identity = 46/106 (43.40%), Postives = 60/106 (56.60%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQ---SXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +FVV+IPD + L+ AAPLLCAG+TV+SP+   G+ Q   +                    KA G HVTVIS+S  K  EA E+L AD ++VS+D   MQ    SLD
Sbjct:  145 RFVVRIPDTLPLDAAAPLLCAGITVYSPMKQHGMLQADAAGRRLGVVGLGGLGHVAVKFGKAFGLHVTVISTSPAKEREARENLKADNFVVSTDQKQMQAMTRSLD 250          
BLAST of CX288947 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.891e-14
Identity = 44/102 (43.14%), Postives = 56/102 (54.90%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATGMQEAADSLD 311
            +VV++P  +  + AAPLLCAGVTV+SP+  +GL                       KA G  VTVISSS  KR EA+  LGAD +L S D  GM  AA ++D
Sbjct:  143 YVVRVPASLPPDGAAPLLCAGVTVYSPMVEYGLNGPGKHLGVVGLGGLGHLGVKFGKAFGMKVTVISSSPAKRGEALGRLGADAFLSSRDGEGMAAAAATMD 244          
The following BLAST results are available for this feature:
BLAST of CX288947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CADH2_ARATH2.021e-1641.35Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CADH1_ORYSJ7.679e-1642.72Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
MTDH1_STYHU1.711e-1539.81Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
MTDH_MEDSA2.234e-1538.83Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH_APIGR2.234e-1541.18Mannitol dehydrogenase OS=Apium graveolens GN=MTD ... [more]
CADH9_ARATH2.918e-1537.86Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH3_ORYSJ2.918e-1541.75Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CAD8A_ORYSJ3.811e-1543.14Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH6_ORYSJ6.501e-1543.40Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CAD8D_ORYSJ1.891e-1443.14Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC02007C04SK IF1 Citrus clementina cDNA clone C02007C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288947 ID=CX288947; Name=CX288947; organism=Citrus clementina; type=EST; length=311bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTGGTATGCAAGAAGCCGCTG
ACTCACTTGAT
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