CX288959

Overview
NameCX288959
Unique NameCX288959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig164 contig Ccv1_Contig164:1..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288959 vs. ExPASy Swiss-Prot
Match: PDC2_PEA (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pisum sativum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 82/103 (79.61%), Postives = 90/103 (87.38%), Query Frame = 3
Query:  195 PVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTY 503
            PVYIS+ CNLPAIPHPTFSR+PVPFSL+PKLSN+MGL         FLNKAVKPVLV GPK+RVAKA +AFVELADA GYA+AVMPSAKG+VPEHHPHFIGTY
Sbjct:    1 PVYISIGCNLPAIPHPTFSRDPVPFSLAPKLSNQMGLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKASDAFVELADASGYALAVMPSAKGMVPEHHPHFIGTY 103          
BLAST of CX288959 vs. ExPASy Swiss-Prot
Match: PDC3_SCHPO (Probable pyruvate decarboxylase C186.09 OS=Schizosaccharomyces pombe GN=SPAC186.09 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.312e-28
Identity = 67/167 (40.12%), Postives = 95/167 (56.89%), Query Frame = 3
Query:    3 IVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTY 503
            I G PN+ND G++ +LHHT+G  DFS +    + +TC    +    +A  LID A+  AL + KPVYI V  N+ +   P  +  P      P+ SN+  L          +N   KPVL+AGPK+R  KA +AF+ELA++   +VAVMP+AK   PE HP++ G Y
Sbjct:  108 ISGSPNTNDIGSSHLLHHTLGTHDFSYQYEMAKKITCAAVSIQRPTEAPRLIDYAIKMALLKKKPVYIEVPTNVAS--QPCAAPGPASLITEPETSNQEYLQMAVDISAKIVNGKQKPVLLAGPKLRSFKAESAFLELANSLNCSVAVMPNAKSFFPESHPNYAGIY 272          
BLAST of CX288959 vs. ExPASy Swiss-Prot
Match: PDC2_SCHPO (Probable pyruvate decarboxylase C1F8.07c OS=Schizosaccharomyces pombe GN=SPAC1F8.07c PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 61/167 (36.53%), Postives = 95/167 (56.89%), Query Frame = 3
Query:    3 IVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTY 503
            + G PN+ND  +  +LHHT+G  DF  ++   + +TC    +   EDA  +ID A+  A+ + KPVYI +  N+   P P     P+   +SP++S++  L          ++K  KP+L+AGPK+R A A +AFV+LA+A   A  +MP+AKG   E H ++ G Y
Sbjct:  103 VSGSPNTNDLSSGHLLHHTLGTHDFEYQMEIAKKLTCAAVAIKRAEDAPVMIDHAIRQAILQHKPVYIEIPTNMANQPCPV--PGPISAVISPEISDKESLEKATDIAAELISKKEKPILLAGPKLRAAGAESAFVKLAEALNCAAFIMPAAKGFYSEEHKNYAGVY 267          
BLAST of CX288959 vs. ExPASy Swiss-Prot
Match: PDC_ZYMMO (Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.960e-24
Identity = 59/166 (35.54%), Postives = 88/166 (53.01%), Query Frame = 3
Query:    3 IVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGT 500
            I G PN+ND+    +LHH +G  D+  +L   + +T     +   E+A   ID  + TAL+E KPVY+ +ACN+ ++  P  +  P     + + S+E  L         F+    K  ++ G K+R A A  A V+ ADA G AVA M +AK   PE +PH+IGT
Sbjct:   97 ISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASM--PCAAPGPASALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGT 260          
BLAST of CX288959 vs. ExPASy Swiss-Prot
Match: PDC_NEUCR (Pyruvate decarboxylase OS=Neurospora crassa GN=cfp PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 57/167 (34.13%), Postives = 84/167 (50.30%), Query Frame = 3
Query:    3 IVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVVNNLEDAHELIDTAVSTALKESKPVYISVACNLPAIPHPTFSREPVPFSLSPKLSNEMGLXXXXXXXXXFLNKAVKPVLVAGPKMRVAKACNAFVELADACGYAVAVMPSAKGLVPEHHPHFIGTY 503
            I G PN+ND     ILHHT+G PD++ +    + +TC    +    DA  LID A+  A+   KP YI +  NL           P+     P  S++  L         +L+  +KPV++ GPK   A +    +E A+A G AVA+ P+AKG+ PE H  F+G +
Sbjct:  103 ISGSPNTNDPSQYHILHHTLGHPDYTYQYEMAKKITCCAVAIPRAIDAPRLIDRALRAAILARKPCYIEIPTNLAGA--TCVRPGPISAITDPITSDKSALEAAAKCAAEYLDGKLKPVILVGPKAGRAGSEKELIEFAEAMGCAVALQPAAKGMFPEDHKQFVGIF 267          
The following BLAST results are available for this feature:
BLAST of CX288959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PDC2_PEA4.201e-4379.61Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pis... [more]
PDC3_SCHPO1.312e-2840.12Probable pyruvate decarboxylase C186.09 OS=Schizos... [more]
PDC2_SCHPO6.511e-2836.53Probable pyruvate decarboxylase C1F8.07c OS=Schizo... [more]
PDC_ZYMMO1.960e-2435.54Pyruvate decarboxylase OS=Zymomonas mobilis GN=pdc... [more]
PDC_NEUCR3.130e-2234.13Pyruvate decarboxylase OS=Neurospora crassa GN=cfp... [more]

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Properties
Property NameValue
Genbank descriptionC02007D06SK IF1 Citrus clementina cDNA clone C02007D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288959 ID=CX288959; Name=CX288959; organism=Citrus clementina; type=EST; length=503bp
GCATCGTTGGTGGCCCAAACTCCAATGATTACGGAACCAACAGGATCCTT
CATCATACCATTGGCTTGCCTGATTTTAGCCAAGAACTCAGATGCTTTCA
GACTGTCACCTGTTATCAGGCTGTGGTGAATAACTTGGAGGATGCACATG
AGTTGATTGATACGGCAGTATCAACTGCTTTGAAAGAAAGCAAGCCTGTT
TATATCAGCGTTGCTTGTAACTTGCCTGCGATTCCTCATCCTACTTTTAG
CCGAGAGCCCGTTCCATTTTCGCTTTCTCCCAAGTTGAGTAATGAGATGG
GCTTGGAGGCTGCAGTTGAGGCAGCAGCAGAGTTCTTGAACAAGGCGGTG
AAACCAGTGTTGGTTGCTGGGCCCAAAATGAGAGTGGCCAAGGCTTGCAA
TGCTTTCGTTGAGCTTGCTGATGCTTGTGGCTACGCCGTTGCGGTGATGC
CATCAGCGAAAGGGCTAGTACCAGAGCACCATCCCCATTTTATTGGAACT
TAT
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