CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CLOK1 (Uracil phosphoribosyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=upp PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 57/175 (32.57%), Postives = 86/175 (49.14%), Query Frame = 1 
Query:   88 LIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            LIRD+     DF    + +  L+      +L   E ++ TP  +    +   KK+  V I+R+G  M   +             ++RD    K + Y  KLP DI ER V++ DP+LATG SA  AI +L +KG    +I  + LI+A +GI  V +  P + I T+ ID  LN+
Sbjct:   18 LIRDKRTGSKDFRELVEEVAMLMAYEVTRNLQTEEVEIETPICNTTCKMLSGKKVAVVPILRAGLGMVGGMLKLIPAAKVGHIGLYRDETTLKPVEYFCKLPQDIGEREVIVTDPMLATGGSAIDAITMLKQKGA--KNIRLMCLIAAEDGIKSVTEAHPDVDIYTAAIDKELNK 190
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CAMC1 (Uracil phosphoribosyltransferase OS=Campylobacter concisus (strain 13826) GN=upp PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = 1 
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++RD+      F    D +  L++     +L   + +V TP  ++        K+    I+R+   M +++               R+ +  + +  Y KLP D  ER  +++DP+ ATG +A  A++ L EKGV E  I F+++I+APEG+    + +P +++ T+ ID  LNE+
Sbjct:   17 TILRDKNTQPFQFRMLVDEISYLMIFEATRNLKVKDVKVQTPV-ALADAKRLTTKVMICPILRAALGMLDSVFTIIPDASVGFLGFQRNEETAQAEFFYAKLPKDAKERMAIIIDPMFATGGTAIDAVKFLREKGVKE--IKFISIIAAPEGLKRFSEIYPDVEVYTASIDEKLNEK 190
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_BRUO2 (Uracil phosphoribosyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=upp PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.388e-13
Identity = 57/177 (32.20%), Postives = 87/177 (49.15%), Query Frame = 1 
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+      +L  T   + TP   M   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P DI  R V+++DP+LAT NSA  AI  L E+G   ++I FL L++APEGI    K  P +++ T+ ID  L+E+
Sbjct:   16 TIMRKKETSTASFRRLLKEISLLLCYEVTRNLELTTMSIETPLMPMEAPVLEGKKLVFASILRAGNGLLEGMLDLVPAARVAHIGLYRDHDTLQPIEYYFKAPEDIVNRLVIVVDPMLATANSAIAAIDKLKERGA--TNIRFLCLLAAPEGIERFTKAHPDVEVFTASIDERLDEK 190
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LISIN (Uracil phosphoribosyltransferase OS=Listeria innocua GN=upp PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.119e-13
Identity = 56/191 (29.32%), Postives = 96/191 (50.26%), Query Frame = 1 
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   T+IRD+      F    D +  L+       +   + QV TP  +        KKL  V I+R+G  M++ +             ++RD D  + + Y  KLP+D+ ER  +++DP+LATG SA  AI  L ++G    ++ F+ L++APEG+  + +  P ++I  + +D  L+E
Sbjct:    3 NVHVINHPL-VQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGVVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGA--RNMKFMCLVAAPEGVKALQEAHPDVEIYVAGLDEKLDE 190
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAAW (Uracil phosphoribosyltransferase OS=Staphylococcus aureus (strain MW2) GN=upp PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   +  + TP   M       KKL  V I+R+G  M + + +           ++RD +  K + Y  KLP DI+ER ++++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGA--KNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAAT (Uracil phosphoribosyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=upp PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   +  + TP   M       KKL  V I+R+G  M + + +           ++RD +  K + Y  KLP DI+ER ++++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGA--KNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAAS (Uracil phosphoribosyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=upp PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   +  + TP   M       KKL  V I+R+G  M + + +           ++RD +  K + Y  KLP DI+ER ++++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGA--KNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAAR (Uracil phosphoribosyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=upp PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   +  + TP   M       KKL  V I+R+G  M + + +           ++RD +  K + Y  KLP DI+ER ++++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGA--KNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAAN (Uracil phosphoribosyltransferase OS=Staphylococcus aureus (strain N315) GN=upp PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   +  + TP   M       KKL  V I+R+G  M + + +           ++RD +  K + Y  KLP DI+ER ++++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGA--KNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDK 191
[Close]
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAAM (Uracil phosphoribosyltransferase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=upp PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.320e-13
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 1 
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   +  + TP   M       KKL  V I+R+G  M + + +           ++RD +  K + Y  KLP DI+ER ++++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPVTKMTAKRLAGKKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRDPETLKAVEYFAKLPQDITERQIIVVDPMLATGASAIEAITSLKKRGA--KNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDK 191
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_CLOK12.388e-1332.57Uracil phosphoribosyltransferase OS=Clostridium kl... [more]
UPP_CAMC12.388e-1327.68Uracil phosphoribosyltransferase OS=Campylobacter ... [more]
UPP_BRUO22.388e-1332.20Uracil phosphoribosyltransferase OS=Brucella ovis ... [more]
UPP_LISIN3.119e-1329.32Uracil phosphoribosyltransferase OS=Listeria innoc... [more]
UPP_STAAW5.320e-1330.86Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_STAAT5.320e-1330.86Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_STAAS5.320e-1330.86Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_STAAR5.320e-1330.86Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_STAAN5.320e-1330.86Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_STAAM5.320e-1330.86Uracil phosphoribosyltransferase OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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