CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LISMF (Uracil phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   T+IRD+      F    D +  L+       +   + QV TP  +        KKL  V I+R+G  M++ +             ++RD D  + + Y  KLP+D+ ER  +++DP+LATG SA  AI  L ++G    ++ F+ L++APEG+  +    P ++I  + +D  L+E
Sbjct:    3 NVHVINHPL-VQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGA--RNMKFMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LISMC (Uracil phosphoribosyltransferase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 56/191 (29.32%), Postives = 95/191 (49.74%), Query Frame = 1
Query:   40 NVYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            NV+VI     ++   T+IRD+      F    D +  L+       +   + QV TP  +        KKL  V I+R+G  M++ +             ++RD D  + + Y  KLP+D+ ER  +++DP+LATG SA  AI  L ++G    ++ F+ L++APEG+  +    P ++I  + +D  L+E
Sbjct:    3 NVHVINHPL-VQHKLTIIRDKNTGTKAFRELVDEVATLMAYEITRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGLYRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGA--RNMKFMCLVAAPEGVKALQDAHPDVEIYVAGLDEKLDE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_CAMFF (Uracil phosphoribosyltransferase OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++RD+      F    D +  L++          + +V+TP  +  +     +K+    I+R+   M  ++               RD    K +  Y KLP D +ER  +++DP+ ATG +A  A++ L EKGV +  I F+++++APEG++   + +P +++ T+ ID  LNE+
Sbjct:   17 TILRDKNTDPFQFRMLIDEITYLMLFEASRDFELKDTEVITPVATTKSK-KLAQKIMICPILRAALGMLGSVFKLLPDASVGFLGFQRDEKTLKAEFYYAKLPKDHAERIAIVIDPMFATGGTAIDAVRFLKEKGVKK--IKFISILAAPEGLNRFSEVYPDVEVYTAAIDRGLNEK 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_AGRRK (Uracil phosphoribosyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=upp PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.948e-13
Identity = 56/176 (31.82%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++R +  S   F      +  L+       L  T + + TP   M + +   KKL   SI+R+G  +   +             ++RD +  + +  Y K P DISER ++++DP+LATGNS+  AI  L E+G    +I FL L++APEGI       P + + T+ ID  LNE
Sbjct:   17 TIMRKKETSTGSFRRLLREISTLLCYEVTRDLEMTMETIETPLQPMESPILEGKKLVFASILRAGNGLLEGMLDLVPSARVSHIGVYRDHETLQPVEYYFKAPEDISERLIIVVDPMLATGNSSIAAIDKLKERGA--HNIRFLCLLAAPEGIANFRAAHPDVPVFTAAIDSHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_ENTFA (Uracil phosphoribosyltransferase OS=Enterococcus faecalis GN=upp PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.074e-13
Identity = 51/177 (28.81%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IR++      F    + +  L+       +P  +  + TP G         KK+  + I+R+G  M + +             ++RD +  +   Y  KLP DI+ R + ++DP+LATG SA  AI  L E+G   S+I F+ L++ PEG+  + +  P + I T+ +D  LNE+
Sbjct:   17 TMIREKNCGTKVFREVVNEIAMLMAYEVSRDMPLEDVVIETPMGKSTQKTLSGKKVAIIPILRAGIGMVDGILELIPAAKVGHVGLYRDEETLQPHEYFVKLPEDIASRQLFVVDPMLATGGSAIMAIDSLKERGA--SNIKFVCLVAVPEGVKALQEAHPDVDIYTAALDERLNED 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RHIME (Uracil phosphoribosyltransferase OS=Rhizobium meliloti GN=upp PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T++R +  S   F      +  L+       L  T +++ TP       V   KKL   SI+R+G  +   +             ++RD +  + + Y  K P++I+ER V+++DP+LATGNSA  AI+ L E+G    +I FL L++APEGI       P + I T+ ID  LNE+
Sbjct:   17 TIMRKKETSTAGFRRLLKEISTLLCYEVTRDLELTTERIETPLVETDAPVLEGKKLVFASILRAGNGLLEGMLELVPSARVAHIGVYRDHETLQAVEYFFKAPDNINERLVIVVDPMLATGNSAIAAIEKLKERGA--RNIRFLCLLAAPEGIRNFQGAHPDVPIFTASIDSHLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACSS (Uracil phosphoribosyltransferase OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=upp PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 53/177 (29.94%), Postives = 85/177 (48.02%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IR++      F   ++ +  L+V      L   + +V TP G         KKL  V I+R+G  M + +             ++RD    +   Y  KLP DI +R + ++DP+LATG SA  AI  L ++G     ++   L++APEG+  V +  P + I  + +D  LNEE
Sbjct:   17 TIIRNKNTGTKVFREVANEIAELMVYEITRDLAMEDVEVETPMGPAIEKQLSGKKLAVVPILRAGLGMVDGVLELIPAAKVGHIGMYRDEKTLQPHEYFVKLPTDIDQRQLFIVDPMLATGGSAIMAIDALKKRGATSMRLVV--LVAAPEGVKAVQEAHPDVDIYAAGLDDGLNEE 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACSK (Uracil phosphoribosyltransferase OS=Lactobacillus sakei GN=upp PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 53/177 (29.94%), Postives = 85/177 (48.02%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            T+IR++      F   ++ +  L+V      L   + +V TP G         KKL  V I+R+G  M + +             ++RD    +   Y  KLP DI +R + ++DP+LATG SA  AI  L ++G     ++   L++APEG+  V +  P + I  + +D  LNEE
Sbjct:   17 TIIRNKNTGTKVFREVANEIAELMVYEITRDLAMEDVEVETPMGPAIEKQLSGKKLAVVPILRAGLGMVDGVLELIPAAKVGHIGMYRDEKTLQPHEYFVKLPTDIDQRQLFIVDPMLATGGSAIMAIDALKKRGATSMRLVV--LVAAPEGVKAVQEAHPDVDIYAAGLDDGLNEE 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DELAS (Uracil phosphoribosyltransferase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=upp PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.185e-12
Identity = 54/175 (30.86%), Postives = 90/175 (51.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALN 606
            TL+R +  S + F      L  L+       +P  + ++ TP  +M   V   KKL  VSI+R+G    + +             ++RD +  + +  Y K+P+++ ER VL++DP+LATGNSA  A+  L  K +    I F+ L++APEG+  + K  P + I T+ +D  L+
Sbjct:   17 TLMRRKEASTNSFRRMLGELSTLMAYEITRDMPLQDIEIETPLETMTGKVIDGKKLVLVSILRAGNGFLDGMLNVVPGARIGHIGLYRDPETLQPVEYYFKMPSEMEERDVLVVDPMLATGNSAAAAVARL--KQLNPKSIKFMCLLAAPEGVATMQKAHPDVDIYTAAVDRQLD 189          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_WOLSU (Uracil phosphoribosyltransferase OS=Wolinella succinogenes GN=upp PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 56/176 (31.82%), Postives = 83/176 (47.16%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T IRD       F      +  L++      L   E +V TP             L  V I+R+G  M + + +           ++RD +  + +  Y KLP DI++R V L+DP+LATG SA  AI  L  +GVP+  + FL +++APEGI  V    P + I  ++ID  L E
Sbjct:   16 TNIRDVNTDTKSFKENLAEISSLILYEATKQLELQEVEVETPLTKTKAYRLSDSSLAVVPILRAGLGMVDGVMSLIPNARIGHIGVYRDEETLEPKHYYCKLPEDIAKRSVFLVDPMLATGGSAIYAIDYLKSQGVPK--VTFLCILAAPEGIKAVTTAHPDVDIFIAKIDERLTE 189          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_LISMF6.948e-1329.32Uracil phosphoribosyltransferase OS=Listeria monoc... [more]
UPP_LISMC6.948e-1329.32Uracil phosphoribosyltransferase OS=Listeria monoc... [more]
UPP_CAMFF6.948e-1327.12Uracil phosphoribosyltransferase OS=Campylobacter ... [more]
UPP_AGRRK6.948e-1331.82Uracil phosphoribosyltransferase OS=Agrobacterium ... [more]
UPP_ENTFA9.074e-1328.81Uracil phosphoribosyltransferase OS=Enterococcus f... [more]
UPP_RHIME1.185e-1232.20Uracil phosphoribosyltransferase OS=Rhizobium meli... [more]
UPP_LACSS1.185e-1229.94Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_LACSK1.185e-1229.94Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_DELAS1.185e-1230.86Uracil phosphoribosyltransferase OS=Delftia acidov... [more]
UPP_WOLSU1.548e-1231.82Uracil phosphoribosyltransferase OS=Wolinella succ... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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