CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_VARPS (Uracil phosphoribosyltransferase OS=Variovorax paradoxus (strain S110) GN=upp PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 54/175 (30.86%), Postives = 90/175 (51.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALN 606
            TL+R +  S + F    + +  L+       +P  + +V TP  +M   V   KKL  VSI+R+G  + + +             ++RD      +  Y K+P ++  R V+++DP+LATGNSA  A++ L E   P+S I F+ L++ PEG+  + K  P + + T+ ID  LN
Sbjct:   17 TLMRRKDASTNSFRRLLNEISMLMAYEVTRDMPMQDIEVETPLETMQAKVIDGKKLVLVSILRAGTGILDGMLTVVPGARVGHIGLYRDPKTLTAVEYYFKMPGEMENRDVIVVDPMLATGNSAVAAVERLKELN-PKS-IKFVCLLTCPEGLATMQKAHPDVPVYTAAIDRELN 189          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAHJ (Uracil phosphoribosyltransferase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=upp PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 53/175 (30.29%), Postives = 88/175 (50.29%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   + ++ TP  +M       KKL  V I+R+G  M + + +           ++RD +  K + Y  KLP DI ER ++++DP+LATG SA +AI  L ++G    +I F+ LI+APEG+  + +    + I  + +D  LN++
Sbjct:   19 IRDMNTGTKEFRELVDEVGMLMAYEVTRDLELQDVEIKTPVTTMTAKRLAGKKLAIVPILRAGLGMTDGVLSLVPAARVGHIGLYRDPNTLKAVEYFAKLPQDIDERQIIVVDPMLATGASAIEAINSLKKRGA--KNIRFMCLIAAPEGVEKMQEAHDDVDIYIAALDEKLNDK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RHIE6 (Uracil phosphoribosyltransferase OS=Rhizobium etli (strain CIAT 652) GN=upp PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 48/146 (32.88%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  178 LPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            L  T + + TP  ++ + +   KKL   SI+R+G  +   +             ++RD +  + +  Y K P D++ER ++++DP+LATGNS+  AI  L E+G    +I FL L++APEGI       P + + T+ ID  LNE+
Sbjct:   48 LELTMETIETPLQTIESPILEGKKLVFASILRAGNGLLEGMLDLVPSARVSHIGVYRDHETLQPVEYYFKAPEDVAERLIIVVDPMLATGNSSIAAIDKLKERGA--HNIRFLCLLAAPEGIRNFRAAHPDVPVFTAAIDSHLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACS1 (Uracil phosphoribosyltransferase OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=upp PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 49/177 (27.68%), Postives = 89/177 (50.28%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            ++IRD+     +F    + +  L+V      +P  + +V TP     T     KK+  V I+R+G  M + +             ++RD +  +   Y  K+P+D+  R ++++DP+LATG SA  A+  L ++G     I F+ L++APEG+    +  P + I ++ +D  LNE+
Sbjct:   17 SIIRDKNCGTREFRQCVNEIAELMVYEVSRDMPLEDVEVETPITKATTKRLAGKKVVVVPILRAGIGMVDGILELIPAAKVGHIGMYRDEETLQPHEYFVKMPDDLENREMIIVDPMLATGGSAIMAVDALKKRGA--KSIKFVCLVAAPEGVKAFREAHPDVDIYSASLDEYLNED 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DESHY (Uracil phosphoribosyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=upp PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +LIRD      DF    + +  L+        P  + +V TP  +M       +K+  + I+R+G  M + +             ++RD +  K + Y  KLP D+ ER ++++DP+LATG SA  AI  L ++G     I  + LI+APEGI  V      + I  + +D  LN+
Sbjct:   17 SLIRDENTGSKDFRELVEEVSMLMAYEVTRDFPLQDVEVKTPVATMTAKAIAGRKVGLIPILRAGLGMVDGMLRLIPTAKVGHVGLYRDPETLKPVEYYCKLPTDVEERDLIVIDPMLATGGSATAAITFLKDRGA--KSIKLMCLIAAPEGIKEVQNYHDDVDIFVAAVDDYLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_DESHD (Uracil phosphoribosyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=upp PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 52/176 (29.55%), Postives = 84/176 (47.73%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +LIRD      DF    + +  L+        P  + +V TP  +M       +K+  + I+R+G  M + +             ++RD +  K + Y  KLP D+ ER ++++DP+LATG SA  AI  L ++G     I  + LI+APEGI  V      + I  + +D  LN+
Sbjct:   17 SLIRDENTGSKDFRELVEEVSMLMAYEVTRDFPLQDVEVKTPVATMTAKAIAGRKVGLIPILRAGLGMVDGMLRLIPTAKVGHVGLYRDPETLKPVEYYCKLPTDVEERDLIVIDPMLATGGSATAAITFLKDRGA--KSIKLMCLIAAPEGIKEVQNYHDDVDIFVAAVDDYLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRSL (Uracil phosphoribosyltransferase OS=Streptococcus salivarius GN=upp PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 52/176 (29.55%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R    S  DF    + +  L+       LP  E ++ TP           KKL  V I+R+G  M +   +           ++RD +  + + Y  KLP DI +R + ++DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  +    P + I T+ +D  LNE
Sbjct:   17 SILRREDTSTKDFRELVNEIAMLMGYEVSRDLPLEEVEIQTPITKTVQKQLSGKKLAIVPILRAGIGMVDGFLSLVPAAKVGHIGMYRDEETLEPVEYLVKLPEDIDQRQIFVVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQDAHPDIDIYTASLDEKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRPM (Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M28 GN=upp PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 52/176 (29.55%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  DF    + +  L+       LP  +  + TP           KKL  V I+R+G  M + L +           ++R+ +  + + Y  KLP DI++R + L+DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  + +  P + I T+ +D  LNE
Sbjct:   17 SILRRQTTSTKDFRELVNEIAMLMGYEVSRDLPLEDVDIQTPVSKTVQKQLAGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRNEETLEPVEYLVKLPEDINQRQIFLVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQEAHPDIDIFTAALDDHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRPG (Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=upp PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 52/176 (29.55%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  DF    + +  L+       LP  +  + TP           KKL  V I+R+G  M + L +           ++R+ +  + + Y  KLP DI++R + L+DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  + +  P + I T+ +D  LNE
Sbjct:   17 SILRRQTTSTKDFRELVNEIAMLMGYEVSRDLPLEDVDIQTPVSKTVQKQLAGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRNEETLEPVEYLVKLPEDINQRQIFLVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQEAHPDIDIFTAALDDHLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRPF (Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=upp PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 52/176 (29.55%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  DF    + +  L+       LP  +  + TP           KKL  V I+R+G  M + L +           ++R+ +  + + Y  KLP DI++R + L+DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  + +  P + I T+ +D  LNE
Sbjct:   17 SILRRQTTSTKDFRELVNEIAMLMGYEVSRDLPLEDVDIQTPVSKTVQKQLAGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRNEETLEPVEYLVKLPEDINQRQIFLVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQEAHPDIDIFTAALDDHLNE 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_VARPS2.021e-1230.86Uracil phosphoribosyltransferase OS=Variovorax par... [more]
UPP_STAHJ2.021e-1230.29Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_RHIE62.021e-1232.88Uracil phosphoribosyltransferase OS=Rhizobium etli... [more]
UPP_LACS12.021e-1227.68Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
UPP_DESHY2.021e-1229.55Uracil phosphoribosyltransferase OS=Desulfitobacte... [more]
UPP_DESHD2.021e-1229.55Uracil phosphoribosyltransferase OS=Desulfitobacte... [more]
UPP_STRSL2.640e-1229.55Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRPM2.640e-1229.55Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRPG2.640e-1229.55Uracil phosphoribosyltransferase OS=Streptococcus ... [more]
UPP_STRPF2.640e-1229.55Uracil phosphoribosyltransferase OS=Streptococcus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
back to top