CX288999

Overview
NameCX288999
Unique NameCX288999
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10785 contig Ccv1_Contig10785:907..1518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAES (Uracil phosphoribosyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=upp PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 52/175 (29.71%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   + ++ TP   M       KKL  V I+R+G  M + + +           ++RD +  + + Y  K+P DI ER ++++DP+LATG SA +AI  L ++G     I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDARTGTKEFRELVDEVGMLMAYEVTRDLELQDVEIQTPVTKMTAKRLAGKKLAIVPILRAGLGMTDGVLSLVPAARVGHIGLYRDPETLEAVEYFAKMPQDIDERQIIVVDPMLATGASAIEAISSLKKRGA--KSIRFMCLIAAPEGVEKMQEAHPDVDIYIAALDEKLNDK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STAEQ (Uracil phosphoribosyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=upp PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 52/175 (29.71%), Postives = 87/175 (49.71%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            IRD      +F    D +  L+       L   + ++ TP   M       KKL  V I+R+G  M + + +           ++RD +  + + Y  K+P DI ER ++++DP+LATG SA +AI  L ++G     I F+ LI+APEG+  + +  P + I  + +D  LN++
Sbjct:   19 IRDARTGTKEFRELVDEVGMLMAYEVTRDLELQDVEIQTPVTKMTAKRLAGKKLAIVPILRAGLGMTDGVLSLVPAARVGHIGLYRDPETLEAVEYFAKMPQDIDERQIIVVDPMLATGASAIEAISSLKKRGA--KSIRFMCLIAAPEGVEKMQEAHPDVDIYIAALDEKLNDK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_RHILO (Uracil phosphoribosyltransferase OS=Rhizobium loti GN=upp PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 50/147 (34.01%), Postives = 78/147 (53.06%), Query Frame = 1
Query:  175 HLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            +L  T   + TP  +M       KKL   S++R+G  +   L             ++RD +  + + Y  K P+D+++R V+++DP+LAT NSA  AI  L  KG   ++I FL L++APEGI    K  P + + T+ ID  LNE+
Sbjct:   47 NLELTTTTIETPIETMEAPTLEGKKLVFASVLRAGNGLLEGLLDLVPAARVAHIGLYRDHETLEAVEYFFKAPSDLADRLVIVVDPMLATANSAIAAIDKL--KGRGATNIRFLCLLAAPEGIERFTKAHPDVPVFTASIDRQLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_LACAC (Uracil phosphoribosyltransferase OS=Lactobacillus acidophilus GN=upp PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 55/171 (32.16%), Postives = 82/171 (47.95%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIYE-KLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEID 594
            T+IR +    ++F      +  L+       LP  + ++ TP G         KKL  V I+R+G  M N +             ++RD +  K   Y  K P DI+ER  L++DP+LATG SAN AI  L ++GV +  I    L++APEGI  V +  P + I  +  D
Sbjct:   17 TIIRRKDTGSNEFRRIVGEIGGLMTYEITRDLPLEDVEIETPMGKTVQKEIAGKKLTIVPILRAGMGMLNGVLEMVPSAKIAVIGMYRDEETLKPHEYFFKAPKDIAERECLVVDPMLATGGSANDAIAALKKRGVKD--IKLAVLVAAPEGIKAVQEENPDVDIYAASED 185          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: URK1_YEAST (Uridine kinase OS=Saccharomyces cerevisiae GN=URK1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 47/177 (26.55%), Postives = 87/177 (49.15%), Query Frame = 1
Query:   43 VYVIQSTFQIRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCK--KLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGK-QLIYEKLPNDISE-RHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRF 561
            ++ +  T Q+  +HT++ ++ ++  DFVFY DRL  +++   L  +P     ++TP       V  C+  ++  V+I+RSG+    +LR           LI  D   G+ QL  E LP +I +   V L++  + +G +   AIQ+L++ G+    I  +  ++   GI  +   F
Sbjct:  287 IHELPPTNQVLSLHTMLLNKNLNCADFVFYFDRLATILLSWALDDIPVAHTNIITPGEHTMENVIACQFDQVTAVNIIRSGDCFMKSLRKTIPNITIGKLLIQSDSQTGEPQLHCEFLPPNIEKFGKVFLMEGQIISGAAMIMAIQVLLDHGIDLEKISVVVYLATEVGIRRILNAF 463          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_PSEA6 (Uracil phosphoribosyltransferase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=upp PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 44/123 (35.77%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  244 KKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            KK+  V I+R+G  M + +             ++RD +  + + Y +K+  D+ ER  L++DP+LATG +    I LL EKG    HI+ L L++APEGI  V  + P + I T+ +D  LNE
Sbjct:   70 KKITIVPILRAGLGMLDGVMQLIPNAKVSVVGLYRDEETLQPVAYFDKVVKDVEERTALIVDPMLATGGTLIATIDLLKEKGC--QHIMGLFLVAAPEGIEAVVSKHPDVDIYTAAVDDKLNE 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_MACCJ (Uracil phosphoribosyltransferase OS=Macrococcus caseolyticus (strain JCSC5402) GN=upp PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 51/174 (29.31%), Postives = 84/174 (48.28%), Query Frame = 1
Query:   91 IRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            IR+      +F    D +  L+       L   + Q+ TP   M       KK+  V I+R+G  M   +             ++RD +  + + Y  K+P DI ER  +++DP+LATG SA +AI  L ++G  +  I F+ L++APEG+  + K  P + I  + +D  LN+
Sbjct:   19 IREESTGTKEFRELVDEVGMLMAYEVTRDLELDDVQIKTPVTEMTAKRLSGKKIAVVPILRAGLGMTEGVLKMIPAARVGHIGLYRDPETLQPVEYFAKMPQDIEERDFIVVDPMLATGGSAIEAINSLKKRGAVK--IRFMCLVAAPEGVEALQKAHPDVDIYIAGLDEKLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_AGRT5 (Uracil phosphoribosyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=upp PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 1
Query:   70 IRGMHTLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNEE 612
            +R   T++R +  S   F      +  L+       L  T + + TP  ++   V   KKL   SI+R+G  +   +             ++RD D  + +  Y K P  +  R V+++DP+LATGNS+  A++ L E+G    +I FL L++APEGI    +  P + I T+ ID  LNE+
Sbjct:   12 VRHKLTIMRKKETSTAGFRRLLREISTLLCYEVTRDLEMTMETIDTPLETIQAPVLEGKKLVFASILRAGNGLLEGMLELVPSARVAHVGVYRDHDTLEAVEYYFKAPESLDARLVIVVDPMLATGNSSIAAVEKLKERGA--KNIRFLCLLAAPEGIKNFREAHPDVPIYTAAIDRHLNEK 191          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_THEMA (Uracil phosphoribosyltransferase OS=Thermotoga maritima GN=upp PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 53/176 (30.11%), Postives = 86/176 (48.86%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQL-IYEKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            T++RD+     +F      +  L+      HL   E +V TP           K +  V I+R+G  M + +             I+RD +  + +  Y KLP    ++ V LLDP+LATG S+ +AI++L E G  +  I  + LI+APEG+  V K++  +KI  + +D  LN+
Sbjct:   17 TIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITKTIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGAKK--ITLVALIAAPEGVEAVEKKYEDVKIYVAALDERLND 190          
BLAST of CX288999 vs. ExPASy Swiss-Prot
Match: UPP_STRPZ (Uracil phosphoribosyltransferase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=upp PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 51/176 (28.98%), Postives = 90/176 (51.14%), Query Frame = 1
Query:   85 TLIRDRGISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSMYTGVDFCKKLCGVSIVRSGESMENALRAXXXXXXXXXXLIHRDGDNGKQLIY-EKLPNDISERHVLLLDPVLATGNSANQAIQLLVEKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDVALNE 609
            +++R +  S  DF    + +  L+       LP  +  + TP           KKL  V I+R+G  M + L +           ++R+ +  + + Y  KLP DI++R + L+DP+LATG SA  A+  L ++G   ++I F+ L++APEG+  + +  P + I T+ +D  LN+
Sbjct:   17 SILRRQTTSTKDFRELVNEIAMLMGYEVSRDLPLEDVDIQTPVSKTVQKQLAGKKLAIVPILRAGIGMVDGLLSLVPAAKVGHIGMYRNEETLEPVEYLVKLPEDINQRQIFLVDPMLATGGSAILAVDSLKKRGA--ANIKFVCLVAAPEGVKKLQEAHPDIDIFTAALDDHLND 190          
The following BLAST results are available for this feature:
BLAST of CX288999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UPP_STAES3.448e-1229.71Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_STAEQ3.448e-1229.71Uracil phosphoribosyltransferase OS=Staphylococcus... [more]
UPP_RHILO3.448e-1234.01Uracil phosphoribosyltransferase OS=Rhizobium loti... [more]
UPP_LACAC3.448e-1232.16Uracil phosphoribosyltransferase OS=Lactobacillus ... [more]
URK1_YEAST4.503e-1226.55Uridine kinase OS=Saccharomyces cerevisiae GN=URK1... [more]
UPP_PSEA64.503e-1235.77Uracil phosphoribosyltransferase OS=Pseudoalteromo... [more]
UPP_MACCJ4.503e-1229.31Uracil phosphoribosyltransferase OS=Macrococcus ca... [more]
UPP_AGRT54.503e-1230.22Uracil phosphoribosyltransferase OS=Agrobacterium ... [more]
UPP_THEMA5.881e-1230.11Uracil phosphoribosyltransferase OS=Thermotoga mar... [more]
UPP_STRPZ5.881e-1228.98Uracil phosphoribosyltransferase OS=Streptococcus ... [more]

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Properties
Property NameValue
Genbank descriptionC02007H02SK IF1 Citrus clementina cDNA clone C02007H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288999 ID=CX288999; Name=CX288999; organism=Citrus clementina; type=EST; length=612bp
ACAAAGCTTGGTCAGCATGACCTCTGCAAAATATATCCCAATGTGTATGT
GATTCAGTCAACATTCCAGATAAGAGGTATGCATACACTGATTCGAGACC
GGGGAATATCGAAGCATGATTTTGTGTTTTATTCAGATCGACTAATTCGG
CTGGTTGTGGAACATGGCCTTGGCCATTTGCCATTCACTGAGAAGCAAGT
AGTGACCCCAACAGGGTCGATGTATACTGGGGTCGATTTTTGCAAGAAAC
TATGTGGGGTCTCCATTGTTCGAAGTGGTGAAAGCATGGAAAATGCATTG
CGTGCATGTTGCAAAGGAATAAAAATTGGAAAAATTCTGATTCACCGTGA
TGGGGACAATGGCAAACAGCTTATCTATGAGAAGCTGCCAAATGATATTT
CAGAAAGACATGTGCTGCTTCTAGATCCTGTTCTTGCCACAGGGAACTCT
GCCAACCAAGCTATTCAACTACTCGTAGAGAAAGGAGTTCCAGAATCCCA
CATTATATTCTTGAATCTCATCTCTGCTCCAGAGGGAATCCATTGTGTTT
GCAAACGTTTTCCATCACTGAAAATTGTCACTTCAGAGATTGATGTTGCT
TTGAATGAAGAA
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