CX289055

Overview
NameCX289055
Unique NameCX289055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:666..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_MOUSE (Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 825          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_HUMAN (Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  755 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 824          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_BOVIN (Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.204e-23
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N+F++D LQ LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 825          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO18_ORYSJ (Protein argonaute 18 OS=Oryza sativa subsp. japonica GN=AGO18 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.879e-23
Identity = 60/120 (50.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRP--LPALKENVKRVMFYC 354
            GI+GTSRP+HYHVL D+N FTAD LQS+TNNLCY Y  CTRSVSI PP YYAH  AFRARFY+                                  GAA     LP +KE VK+ MF+C
Sbjct:  993 GIKGTSRPSHYHVLRDDNNFTADQLQSVTNNLCYLYTSCTRSVSIPPPVYYAHKLAFRARFYL------------------------TQVPVAGGDPGAAKFQWVLPEIKEEVKKSMFFC 1088          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO13_ORYSJ (Protein argonaute 13 OS=Oryza sativa subsp. japonica GN=AGO13 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.413e-23
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP HYHVL+DEN FTAD LQ+LTNNLCY YARCT +VS+VPPAYY+HLAA  A   ++  +S S
Sbjct:  707 GIQGTSRPTHYHVLYDENHFTADELQTLTNNLCYIYARCTHAVSVVPPAYYSHLAASHAHCCIKGHSSGS 776          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1_MOUSE (Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.429e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HY+VLWD+N+FTAD LQ LT  LC+TY RCTRSVSI  PAYYA L AFRAR+++  +  DS
Sbjct:  753 GIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDS 822          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1_HUMAN (Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 1.429e-22
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HY+VLWD+N+FTAD LQ LT  LC+TY RCTRSVSI  PAYYA L AFRAR+++  +  DS
Sbjct:  753 GIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDS 822          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO3_DANRE (Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.866e-22
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HY+VLWD+N FTAD  Q LT  LC+TY RCTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYYVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDS 825          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO4_XENLA (Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HY VLWD+N FTAD LQ LT  LC+TY RCTRSVSI  PAYYA L AFRAR+++  +  DS
Sbjct:  780 GIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDS 849          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO4_MOUSE (Protein argonaute-4 OS=Mus musculus GN=Eif2c4 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HY VLWD+N FTAD LQ LT  LC+TY RCTRSVSI  PAYYA L AFRAR+++  +  DS
Sbjct:  757 GIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDS 826          
The following BLAST results are available for this feature:
BLAST of CX289055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AGO2_MOUSE2.204e-2368.57Protein argonaute-2 OS=Mus musculus GN=Eif2c2 PE=1... [more]
AGO2_HUMAN2.204e-2368.57Protein argonaute-2 OS=Homo sapiens GN=EIF2C2 PE=1... [more]
AGO2_BOVIN2.204e-2368.57Protein argonaute-2 OS=Bos taurus GN=EIF2C2 PE=2 S... [more]
AGO18_ORYSJ2.879e-2350.00Protein argonaute 18 OS=Oryza sativa subsp. japoni... [more]
AGO13_ORYSJ6.413e-2370.00Protein argonaute 13 OS=Oryza sativa subsp. japoni... [more]
AGO1_MOUSE1.429e-2268.57Protein argonaute-1 OS=Mus musculus GN=Eif2c1 PE=1... [more]
AGO1_HUMAN1.429e-2268.57Protein argonaute-1 OS=Homo sapiens GN=EIF2C1 PE=1... [more]
AGO3_DANRE1.866e-2268.57Protein argonaute-3 OS=Danio rerio GN=eif2c3 PE=3 ... [more]
AGO4_XENLA9.260e-2268.57Protein argonaute-4 OS=Xenopus laevis GN=eif2c4 PE... [more]
AGO4_MOUSE9.260e-2268.57Protein argonaute-4 OS=Mus musculus GN=Eif2c4 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC02008E12SK IF1 Citrus clementina cDNA clone C02008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289055 ID=CX289055; Name=CX289055; organism=Citrus clementina; type=EST; length=506bp
GGAATACAGGGTACAAGCCGTCCTGCCCATTACCATGTTCTATGGGATGA
GAACAAGTTTACAGCTGATGGACTACAGTCCCTCACAAACAACCTCTGCT
ACACATATGCTAGGTGCACTCGTTCTGTTTCCATTGTTCCCCCAGCATAC
TATGCCCACCTTGCAGCATTCCGAGCTCGTTTCTATATGGAGCCAGAGAC
ATCAGACAGTGGTTCAATGACCAGTGGAACTATTGGACGTGGAGGCATGG
GTGGAGGGGTCGGTGCAAGGAGCACACGTGGACCTGGAGTTGGTGCTGCT
GTCAGACCCCTTCCTGCCCTGAAGGAGAATGTCAAGCGGGTTATGTTTTA
CTGTTAGGGTTGCCTTTCCATGAGATAAGAATTCGACATTTGCCCTGATG
AGCCAAGGATGTCAAGATTTAGATCTATTTTGAGAACTCCATAGATGGTT
TGCCTTCCAGTGTATTGCATGCGATACTTGTCTGTAATGGATGCCAGTGA
TATTTT
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