CX289055

Overview
NameCX289055
Unique NameCX289055
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14194 contig Ccv1_Contig14194:666..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO4_HUMAN (Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HY VLWD+N FTAD LQ LT  LC+TY RCTRSVSI  PAYYA L AFRAR+++  +  DS
Sbjct:  757 GIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDS 826          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO4_CHICK (Protein argonaute-4 OS=Gallus gallus GN=EIF2C4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.260e-22
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HY VLWD+N FTAD LQ LT  LC+TY RCTRSVSI  PAYYA L AFRAR+++  +  DS
Sbjct:  690 GIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDS 759          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO3_BOVIN (Protein argonaute-3 OS=Bos taurus GN=EIF2C3 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLT-NNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDS 210
            GIQGTSRP+HYHVLWD+N FTAD LQ LT     +TY  CTRSVSI  PAYYAHL AFRAR+++  +  DS
Sbjct:  756 GIQGTSRPSHYHVLWDDNCFTADELQLLTYQPSAHTYVHCTRSVSIPAPAYYAHLVAFRARYHLVDKERDS 826          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: TAG76_CAEEL (Putative protein tag-76 OS=Caenorhabditis elegans GN=tag-76 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME 192
            G+QGTSRPA YHVL DE KFTAD +QS+T  +C+TY RCTRSVSI  P YYA L A RAR +++
Sbjct:  903 GVQGTSRPARYHVLLDECKFTADEIQSITYGMCHTYGRCTRSVSIPTPVYYADLVATRARCHVK 966          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO17_ORYSJ (Protein argonaute 17 OS=Oryza sativa subsp. japonica GN=AGO17 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.258e-17
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    7 QGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPET 201
            QGT RP +YHVLWDEN F A   Q LTN LCYT A CT+S+S+V P +YA L + RAR Y++P +
Sbjct:  773 QGTKRPRYYHVLWDENDFLAGSFQELTNYLCYTSATCTQSISVVAPVHYARLLSSRARCYIKPRS 837          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO2_ORYSJ (Protein argonaute 2 OS=Oryza sativa subsp. japonica GN=AGO2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.209e-15
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME 192
            G+ GTSRP HY+ L DE+ F +D LQ L  NLC+ +ARCT+ VS+  P YYA LAA+R R Y E
Sbjct:  926 GLIGTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRGRLYYE 989          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO3_ORYSJ (Protein argonaute 3 OS=Oryza sativa subsp. japonica GN=AGO3 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.428e-15
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYME 192
            G  GTSRP HY+ L DE+ F +D LQ L  NLC+ +ARCT+ VS+  P YYA LAA+R R Y E
Sbjct:  960 GEVGTSRPTHYYSLLDEHGFASDDLQKLVYNLCFVFARCTKPVSLATPVYYADLAAYRGRLYYE 1023          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 46/121 (38.02%), Postives = 60/121 (49.59%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRP---LPALKENVKRVMFYC 354
            G+ GT+RP HYHVL DEN FT D LQ L +NL Y Y R T ++S V P  YAHLAA +   ++  + + S                           GA  RP   LP L  +V++ MF+C
Sbjct:  790 GMIGTTRPTHYHVLHDENNFTPDDLQELVHNLSYVYQRSTTAISGVAPICYAHLAAAQVSQFVRLDDAASEGSGDG---------------------GAPPRPVPELPRLHPDVRQSMFFC 889          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.986e-12
Identity = 45/122 (36.89%), Postives = 58/122 (47.54%), Query Frame = 1
Query:    1 GIQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRA----RFYMEPETSDSXXXXXXXXXXXXXXXXXXXXXXXXXXVGAAVRPLPALKENVKRVMFYC 354
            G+ GT+RP HYH+L DE  F+AD LQ L ++L Y Y R T ++S+V P  YAHLAA +     +F    ETS S                            A V  LP L   V+  MF+C
Sbjct:  802 GMIGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGHTSAG-------------------SAPVPELPRLHNKVRSSMFFC 904          
BLAST of CX289055 vs. ExPASy Swiss-Prot
Match: AGO1_SCHPO (Protein argonaute OS=Schizosaccharomyces pombe GN=ago1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    4 IQGTSRPAHYHVLWDENKFTADGLQSLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARF 183
            +QG S P HY VL DE +   D  Q+L  NLCY YAR T +VS+VPP YYAHL +  AR+
Sbjct:  737 LQGVSVPVHYTVLHDEIQMPPDQFQTLCYNLCYVYARATSAVSLVPPVYYAHLVSNLARY 796          
The following BLAST results are available for this feature:
BLAST of CX289055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
AGO4_HUMAN9.260e-2268.57Protein argonaute-4 OS=Homo sapiens GN=EIF2C4 PE=1... [more]
AGO4_CHICK9.260e-2268.57Protein argonaute-4 OS=Gallus gallus GN=EIF2C4 PE=... [more]
AGO3_BOVIN6.636e-2066.20Protein argonaute-3 OS=Bos taurus GN=EIF2C3 PE=2 S... [more]
TAG76_CAEEL6.211e-1865.63Putative protein tag-76 OS=Caenorhabditis elegans ... [more]
AGO17_ORYSJ5.258e-1758.46Protein argonaute 17 OS=Oryza sativa subsp. japoni... [more]
AGO2_ORYSJ2.209e-1556.25Protein argonaute 2 OS=Oryza sativa subsp. japonic... [more]
AGO3_ORYSJ6.428e-1556.25Protein argonaute 3 OS=Oryza sativa subsp. japonic... [more]
AGO15_ORYSJ2.068e-1338.02Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ2.986e-1236.89Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO1_SCHPO5.093e-1255.00Protein argonaute OS=Schizosaccharomyces pombe GN=... [more]

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Properties
Property NameValue
Genbank descriptionC02008E12SK IF1 Citrus clementina cDNA clone C02008E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289055 ID=CX289055; Name=CX289055; organism=Citrus clementina; type=EST; length=506bp
GGAATACAGGGTACAAGCCGTCCTGCCCATTACCATGTTCTATGGGATGA
GAACAAGTTTACAGCTGATGGACTACAGTCCCTCACAAACAACCTCTGCT
ACACATATGCTAGGTGCACTCGTTCTGTTTCCATTGTTCCCCCAGCATAC
TATGCCCACCTTGCAGCATTCCGAGCTCGTTTCTATATGGAGCCAGAGAC
ATCAGACAGTGGTTCAATGACCAGTGGAACTATTGGACGTGGAGGCATGG
GTGGAGGGGTCGGTGCAAGGAGCACACGTGGACCTGGAGTTGGTGCTGCT
GTCAGACCCCTTCCTGCCCTGAAGGAGAATGTCAAGCGGGTTATGTTTTA
CTGTTAGGGTTGCCTTTCCATGAGATAAGAATTCGACATTTGCCCTGATG
AGCCAAGGATGTCAAGATTTAGATCTATTTTGAGAACTCCATAGATGGTT
TGCCTTCCAGTGTATTGCATGCGATACTTGTCTGTAATGGATGCCAGTGA
TATTTT
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