CX289056

Overview
NameCX289056
Unique NameCX289056
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length573
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_CANGA (1,4-alpha-glucan-branching enzyme OS=Candida glabrata GN=GLC3 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.362e-57
Identity = 115/189 (60.85%), Postives = 135/189 (71.43%), Query Frame = 2
Query:    5 MAIADKWIELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MA+ D WI+LLK K+D+DW MG IVHT+TNRR  EK VAY ESHDQALVGDKT+AFWLMD  MY  M + +  T  IDRGIALHKMIRL+T  LGGEAYLNF GNEFGHPEW+DFPR            GNN SY   RR+F+L D D LRYR + EFD AMQ+ E K+ ++ +   YVS K + D+VI
Sbjct:  444 MALPDMWIKLLKTKQDDDWDMGHIVHTLTNRRHGEKVVAYCESHDQALVGDKTLAFWLMDAAMYTDMTVLKEPTLVIDRGIALHKMIRLITHSLGGEAYLNFEGNEFGHPEWLDFPR-----------VGNNDSYHYARRQFNLVDDDLLRYRHLNEFDAAMQNCESKHQWLNTPQAYVSLKHEVDKVI 621          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_DICDI (1,4-alpha-glucan-branching enzyme OS=Dictyostelium discoideum GN=glgB PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.030e-57
Identity = 106/190 (55.79%), Postives = 138/190 (72.63%), Query Frame = 2
Query:    5 MAIADKWIELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            M I DKWIEL+K K+DEDW MG I H ++NRR+ EK +AYAESHDQ+LVGDKT+AFWLMDK+MY  M++    TP IDRG++LHKMIRL+T  LGG+ YLNFMGNEFGHPEW+DFPR            GNN S    RRR+DL     LRY+ +++FD AM   E+++ +++S+  Y+S K + D++IV
Sbjct:  416 MGIPDKWIELVKEKKDEDWNMGTIAHMLSNRRYKEKNIAYAESHDQSLVGDKTLAFWLMDKEMYTNMSVTTEETPIIDRGMSLHKMIRLITSSLGGDGYLNFMGNEFGHPEWVDFPR-----------EGNNNSLHHARRRWDLYRNPLLRYKQLRDFDIAMNKAEQEFRWLSSDFAYISLKHEDDKIIV 594          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_KLULA (1,4-alpha-glucan-branching enzyme OS=Kluyveromyces lactis GN=GLC3 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 2.888e-55
Identity = 109/189 (57.67%), Postives = 133/189 (70.37%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MA+ D WI+LLK+ RDEDW+MG IVHT+ NRR  EK VAY ESHDQALVGDKT+AFWLMD  MY  M + + STP +DRGIALHK+IRL+T  LGGEAYLNF GNEFGHPEW+DFP              N  SY   RR+F+L D   LRY+ + +FD+AMQ  E+ Y ++ +   YVS K + D+VI
Sbjct:  450 MALPDMWIKLLKESRDEDWEMGHIVHTLVNRRHREKVVAYTESHDQALVGDKTLAFWLMDAAMYTDMTILKESTPVVDRGIALHKLIRLITHSLGGEAYLNFEGNEFGHPEWLDFPN-----------VNNGDSYHYARRQFNLVDDPLLRYQYLYQFDKAMQTTEKNYKWLNTPQAYVSLKHEVDKVI 627          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_YEAST (1,4-alpha-glucan-branching enzyme OS=Saccharomyces cerevisiae GN=GLC3 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.926e-55
Identity = 106/190 (55.79%), Postives = 138/190 (72.63%), Query Frame = 2
Query:    5 MAIADKWIELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MA+ D WI+L+K K+D++W+MG+IV+T+TNRR+ EK VAY ESHDQALVGDKT+AFWLMD  MY  M + +  +  IDRGIALHKMIRL+T  LGGEAYLNF GNEFGHPEW+DFP              N  SY   RR+F+L D   LRY+ + EFDR+MQ  E+++ ++ ++  YVS K +GD++IV
Sbjct:  442 MALPDMWIKLIKEKKDDEWEMGSIVYTLTNRRYGEKVVAYCESHDQALVGDKTLAFWLMDAAMYTDMTVLKEPSIVIDRGIALHKMIRLITHSLGGEAYLNFEGNEFGHPEWLDFPN-----------VNNGDSYKYARRQFNLADDPLLRYQNLNEFDRSMQLCEKRHKWLNTKQAYVSLKHEGDKMIV 620          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_ASHGO (1,4-alpha-glucan-branching enzyme OS=Ashbya gossypii GN=GLC3 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 5.446e-54
Identity = 105/189 (55.56%), Postives = 133/189 (70.37%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MA+ D WI+LLK+ +DEDW MG IV+T+ NRR+ EK VAYAESHDQALVGDKT+AFW+MD  MY  M + +  TP +DRGIALHK+IRL+T  LGGE+YLNF GNEFGHPEW+DFP  +           N  SY   RR+F+L D   LRY+ +  FD+AMQ  E K+ ++ +   YVS K + D+VI
Sbjct:  440 MALPDMWIKLLKESKDEDWSMGHIVYTLVNRRYKEKVVAYAESHDQALVGDKTLAFWMMDAAMYTDMTVLKELTPVVDRGIALHKLIRLITHSLGGESYLNFEGNEFGHPEWLDFPNAN-----------NGDSYQYARRQFNLVDDGLLRYKHLYAFDKAMQEAEGKHKWLNTPQAYVSLKHETDKVI 617          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_GLOIN (1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 7.113e-54
Identity = 105/189 (55.56%), Postives = 134/189 (70.90%), Query Frame = 2
Query:    5 MAIADKWIELLKK-RDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVI 568
            MAI D WI+LLK+ RD+DW MG I  T+TNRR +EK +AYAESHDQALVGDK     +  + MY  M+   P TP IDRG+ALHKMIRL+T GLGGE YLNF GNEFGHPEW+DFPR            GNN S+   RR++++ D D LRY+ + EFD+AMQHLEE+YG+++S   Y+S K   ++++
Sbjct:  422 MAIPDMWIKLLKEQRDDDWDMGNICWTLTNRRHMEKTIAYAESHDQALVGDKNTCLLVNGQGMYTHMSDMTPLTPIIDRGLALHKMIRLLTHGLGGEGYLNFEGNEFGHPEWLDFPRA-----------GNNNSFHYARRQWNVVDDDLLRYKYLNEFDKAMQHLEEQYGWLSSPQAYISLKHNENKLV 599          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_ASPOR (1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae GN=gbeA PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.610e-53
Identity = 105/190 (55.26%), Postives = 136/190 (71.58%), Query Frame = 2
Query:    5 MAIADKWIELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MA+ D +I+LLK K+D++W +G +  T+TNRR  EK +AYAESHDQALVGDKT+  WL DK+MY  M++    TP I+RG+ALHK+IRLVT GLGGE YLNF GNEFGHPEW+DFPR            GNN S+   RR+ +L +   LRY+ + +FDRAMQ  EEKYG++ S   YVS K++ D+V+V
Sbjct:  425 MAVPDMYIKLLKEKKDDEWDIGNLSFTLTNRRHGEKTIAYAESHDQALVGDKTLMMWLCDKEMYTHMSVLTEFTPIIERGMALHKLIRLVTHGLGGEGYLNFEGNEFGHPEWLDFPR-----------DGNNNSFWYARRQLNLTEDHLLRYKFLNDFDRAMQLTEEKYGWLHSPQAYVSLKNETDKVLV 603          
BLAST of CX289056 vs. ExPASy Swiss-Prot
Match: GLGB_EMENI (1,4-alpha-glucan-branching enzyme OS=Emericella nidulans GN=be1 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 6.021e-53
Identity = 106/190 (55.79%), Postives = 132/190 (69.47%), Query Frame = 2
Query:    5 MAIADKWIELLK-KRDEDWKMGAIVHTMTNRRWLEKCVAYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPSTPRIDRGIALHKMIRLVTMGLGGEAYLNFMGNEFGHPEWIDFPRGDQRLPNGQFVPGNNFSYDKCRRRFDLGDADYLRYRGMQEFDRAMQHLEEKYGFMTSEHQYVSRKDQGDRVIV 571
            MAI D +I+LLK K D DW +G +  T+TNRR  EK +AYAESHDQALVGDK++  WL DK+MY  M++    TP I+RG+ALHKMIRLVT  LGGE YLNF GNEFGHPEW+DFPR            GNN S+   RR+ +L +   LRYR + EFDRAMQ  E KYG++ +   Y+S K +GD+V+V
Sbjct:  422 MAIPDMYIKLLKEKSDNDWDIGNLAFTLTNRRHGEKTIAYAESHDQALVGDKSLMMWLCDKEMYTHMSVLTEFTPVIERGMALHKMIRLVTHALGGEGYLNFEGNEFGHPEWLDFPRA-----------GNNNSFWYARRQLNLTEDHLLRYRFLNEFDRAMQLTESKYGWLHAPQAYISLKHEGDKVLV 600          
The following BLAST results are available for this feature:
BLAST of CX289056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GLGB_CANGA2.362e-5760.851,4-alpha-glucan-branching enzyme OS=Candida glabr... [more]
GLGB_DICDI4.030e-5755.791,4-alpha-glucan-branching enzyme OS=Dictyostelium... [more]
GLGB_KLULA2.888e-5557.671,4-alpha-glucan-branching enzyme OS=Kluyveromyces... [more]
GLGB_YEAST4.926e-5555.791,4-alpha-glucan-branching enzyme OS=Saccharomyces... [more]
GLGB_ASHGO5.446e-5455.561,4-alpha-glucan-branching enzyme OS=Ashbya gossyp... [more]
GLGB_GLOIN7.113e-5455.561,4-alpha-glucan-branching enzyme OS=Glomus intrar... [more]
GLGB_ASPOR4.610e-5355.261,4-alpha-glucan-branching enzyme OS=Aspergillus o... [more]
GLGB_EMENI6.021e-5355.791,4-alpha-glucan-branching enzyme OS=Emericella ni... [more]

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Properties
Property NameValue
Genbank descriptionC02008F01SK IF1 Citrus clementina cDNA clone C02008F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289056 ID=CX289056; Name=CX289056; organism=Citrus clementina; type=EST; length=573bp
GCAAATGGCCATCGCTGATAAATGGATTGAGCTCCTTAAGAAAAGGGATG
AAGACTGGAAAATGGGTGCAATCGTTCACACAATGACCAACAGGAGGTGG
TTGGAAAAGTGTGTTGCTTATGCTGAAAGTCATGACCAAGCTCTTGTTGG
TGACAAGACAATTGCATTTTGGTTGATGGACAAGGATATGTATGATTTTA
TGGCTCTGGACAGACCGTCAACTCCCCGCATAGATCGTGGAATAGCATTA
CACAAGATGATCAGGCTCGTTACCATGGGATTAGGTGGAGAAGCATACTT
GAACTTTATGGGCAATGAATTTGGACATCCTGAGTGGATTGATTTTCCAA
GGGGCGATCAGCGTCTTCCTAATGGTCAATTCGTTCCTGGGAACAATTTC
AGCTATGACAAGTGCCGGCGTAGGTTTGATCTAGGGGATGCTGATTATCT
GAGATATCGTGGAATGCAAGAATTTGATCGGGCAATGCAGCATCTTGAGG
AGAAGTACGGGTTCATGACTTCTGAGCACCAATATGTGTCACGGAAGGAC
CAGGGAGACAGGGTAATAGTCTT
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