CX290861

Overview
NameCX290861
Unique NameCX290861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig327 contig Ccv1_Contig327:1..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_PEA (Glucan endo-1,3-beta-glucosidase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.807e-17
Identity = 43/119 (36.13%), Postives = 72/119 (60.50%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            IG+ YG + +NLPP      L ++ +I+++RLY  +   + AL ++G+ +++G  + D+  LA++ ++A QW+  NVL FYP+ KI  I VGNEV  +     L   +LPA  N+  A+
Sbjct:   34 IGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPSVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAI 152          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13A_HORVU (Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vulgare PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.083e-17
Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPA-LASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG VA+NLPP     +L +S  +  +R+Y AD   + AL  +G+G+++     D+ A LA++ + A  W+  NV P+YPA  I  I  GNEV   + QN++    PAM N+  AL
Sbjct:    2 IGVCYGVVANNLPPANEVVQLYRSNGLTGMRIYFADAKALSALRGSGIGLILDVGGNDVLASLAANASNAANWVRDNVRPYYPAVNIKYIAAGNEVWGGDTQNIV----PAMRNLGAAL 116          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13F_HORVU (Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.258e-17
Identity = 45/118 (38.14%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGVNYG +  +LP P     L ++ +I  +R++  D  +++AL N+G+G+V+G  + D+  LASD + A  W++S V PF  A     I  GNEV+      L+   LPAM N++ AL
Sbjct:    7 IGVNYGMMGSDLPSPDKVVALYKANNITDVRIFHPDTNVLEALRNSGLGVVLGTLNSDLAPLASDASYAASWVHSYVQPFAGAVSFRYINAGNEVIPGESAALV---LPAMKNLEAAL 121          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKII-LITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG +A+NLPP     +L +S  I  +R+Y   P  I+AL  +G+ +++G ++ D+  LA   +AAT W+++NV P++ A   I  I VGNE+     Q+    +L AM N+  AL
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKGITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEITGGAAQS----ILAAMRNLNKAL 115          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.814e-16
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG + +NLP  +   +L +S  I  +R+Y AD   + AL N+G+G+++   +  +  +A+  + A  W+ +NV P+YPA  I  I  GNEV     Q+    +LPAM N+  AL
Sbjct:   29 IGVCYGVIGNNLPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQS----ILPAMRNLNAAL 142          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E134_ARATH (Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis thaliana GN=At3g13560 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.814e-16
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGVN G    N+PPP+    LL+S  I  +RLY A+  ++KA ANT + +++G ++ +I  +   P+AA  W+N NV  + P++ I  I VG+EV ++   ++   L  A+ N+  AL
Sbjct:   26 IGVNIGTDLTNMPPPSDIVTLLKSQQITHVRLYDANSHMLKAFANTSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEV-LTTIPHVAPILASALNNIHKAL 142          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 9.917e-16
Identity = 42/118 (35.59%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGVN G    ++P P     LL++  I+ +RLY ADP ++ ALANTG+ ++I   +  +  +    + A  W+  NV+  YPA+ I  ++VG+EV+ S   N    L+ A+ N+  AL
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSL-SNAAPVLVSAIKNVHAAL 148          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E133_ARATH (Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis thaliana GN=At2g01630 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.692e-15
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGVN G    N+P P     LL+S +I ++RLY AD +++ A A+TGV ++I   +  +  ++     A  W+  NV  +YPA+ I  I VG+EV+ S   N  S L+ A+  +Q AL
Sbjct:   23 IGVNIGTEVTNMPSPTQVVALLKSQNINRVRLYDADRSMLLAFAHTGVQVIISVPNDQLLGISQSNATAANWVTRNVAAYYPATNITTIAVGSEVLTSL-TNAASVLVSALKYIQAAL 139          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.922e-15
Identity = 43/118 (36.44%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG++A+NLP       L ++  I+K+R+Y +D  I K+L  + + I++   + D+ ALA+  + A  W+  N+   +P  K   I++GNEV  SN+      LL AM N+ NAL
Sbjct:   36 IGVCYGKIANNLPSEQDVINLYKANGIRKMRIYNSDTNIFKSLNGSNIEIILDVPNQDLEALANS-SIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVYNAL 152          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.428e-15
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG+ A+NLP       L  +  I+KLR+Y  D  I KAL  + + I++G  + D+ ALA+  + A  W+  N+   +P  K   I++GN+V  +N+      LL AM N+ NAL
Sbjct:   12 IGVCYGKAANNLPSDQDVINLYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALANS-SIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVYNAL 128          
The following BLAST results are available for this feature:
BLAST of CX290861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
E13B_PEA1.807e-1736.13Glucan endo-1,3-beta-glucosidase OS=Pisum sativum ... [more]
E13A_HORVU3.083e-1739.50Glucan endo-1,3-beta-glucosidase GI OS=Hordeum vul... [more]
E13F_HORVU5.258e-1738.14Putative glucan endo-1,3-beta-glucosidase GVI (Fra... [more]
E13D_HORVU3.408e-1637.82Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
E13B_HORVU5.814e-1636.44Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E134_ARATH5.814e-1636.44Glucan endo-1,3-beta-glucosidase 4 OS=Arabidopsis ... [more]
E132_ARATH9.917e-1635.59Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E133_ARATH1.692e-1537.29Glucan endo-1,3-beta-glucosidase 3 OS=Arabidopsis ... [more]
E13C_TOBAC4.922e-1536.44Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13K_TOBAC6.428e-1537.29Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]

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Properties
Property NameValue
Genbank descriptionC03001A04Rv OF1 Citrus clementina cDNA clone C03001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290861 ID=CX290861; Name=CX290861; organism=Citrus clementina; type=EST; length=506bp
CAAGGCCACAAGCAACAACACATCACAACAAATTTCACTTTCTTCTCCAT
CTATTTCTCTCTGTCCATGGCCAACTCCAACTCCTCACTCTTCCTCTTCG
TCTCTCTCCTCCTCTTTCAAGTTCTTCACTTCTCAAGTTCGCAGTCATTC
ATCGGAGTGAACTACGGCCAAGTAGCGGATAACCTGCCCCCGCCGGCGGC
TACAGCGAAGCTTCTGCAATCGACTTCTATACAGAAATTGAGGCTCTACG
GTGCAGATCCGGCCATCATCAAAGCACTAGCAAACACTGGGGTCGGTATT
GTAATTGGCGCTTCCAGTGGAGATATTCCGGCTCTCGCTTCTGATCCCAA
CGCCGCTACTCAGTGGATCAACTCAAACGTGTTGCCTTTTTACCCCGCCA
GCAAAATCATTCTCATCACCGTTGGGAATGAGGTGATGATATCAAACGAC
CAAAATCTAATCAGTCAGCTTCTCCCGGCAATGACAAATATGCAAAACGC
TCTCAA
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