CX290861

Overview
NameCX290861
Unique NameCX290861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig327 contig Ccv1_Contig327:1..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.395e-15
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG  A+NLP  +    + +   I+ +RLY  + A ++A+  TG+ +V+GA +  +  LA+ P AA  W+ SN+   YP      + VGNEV     +NL+    PAM N+  AL
Sbjct:    7 IGVCYGMSANNLPAASTVVSMFKFNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNI-QAYPKVSFRYVCVGNEVAGGATRNLV----PAMKNVHGAL 119          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_MAIZE (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Zea mays PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.395e-15
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG   DNLPP +   +L QS  I  LR+Y  D   + AL+ T +G+++   + D+ +LASDP+AA  W+ SNV      S    I VGNEV   +       +LPAM N+  AL
Sbjct:   30 IGVCYGVNGDNLPPASDVVQLYQSNGINLLRIYFPDANPLNALSGTSIGLIMDVPNTDLASLASDPSAAAAWVQSNV-QASRRSACRYIAVGNEVSGGD----TGSILPAMQNLNAAL 142          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13A_ARATH (Glucan endo-1,3-beta-glucosidase, acidic isoform OS=Arabidopsis thaliana GN=BG2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.096e-14
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG + D LP P+    L +  +IQ++RLYG DP  + AL  + + +++   S D+  LAS    A +W+  NV  +    +   I VGNEV  S    +   LL AM N++NA+
Sbjct:   32 IGVCYGMLGDTLPSPSDVVALYKQQNIQRMRLYGPDPGALAALRGSDIELILDVPSSDLERLASSQTEADKWVQENVQSYRDGVRFRYINVGNEVKPS----VGGFLLQAMQNIENAV 145          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.870e-14
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG++A+NLP       L ++  I+K+R+Y  D  I KAL  + + I++   + D+ ALA+  + A  W+  N+   +P  K   I++GNEV  +N+      LL AM N+ NAL
Sbjct:   36 IGVCYGEIANNLPSEQDVINLYKANGIRKMRIYYPDTNIFKALNGSNIEIILEVPNQDLEALANS-SIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVYNAL 152          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.190e-14
Identity = 43/118 (36.44%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG++A+NLP       L ++  I+K+R+Y  D  I KAL  + + I++   + D+ ALA+  + A  W+  N+   +P  K   I++GNEV   N+      LL AM N+ NAL
Sbjct:   32 IGVCYGKIANNLPSEQDVINLYKANGIRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALANS-SIANGWVQDNIRSHFPYVKFKYISIGNEVSPINNGQYSQFLLHAMENVYNAL 148          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 41/118 (34.75%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV YG+ A+NLP       L  +  I+K+R+Y  D  +  AL  + + I++     D+ +L +DP+ A  W+  N++  +P  K   I VGNEV   N+      + PAM N+ NAL
Sbjct:   32 IGVCYGKHANNLPSDQDVINLYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDLQSL-TDPSRANGWVQDNIINHFPDVKFKYIAVGNEVSPGNNGQYAPFVAPAMQNVYNAL 148          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13C_HORVU (Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.166e-14
Identity = 46/118 (38.98%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV  G + +NLP P+    L +S  I  +R+Y  +  ++ AL+ TG+ +++      +P+LAS P+AA  W+ +NV  F P      I V NEVM S  Q   S +LPAM N+Q AL
Sbjct:   26 IGVCNGVLGNNLPAPSDVVTLYRSKRIDAMRIYEPESKVLTALSGTGIAVLMDVGPA-LPSLASSPSAAAAWVKANVSSF-PGVSFRYIAVRNEVMDSAGQ---STILPAMRNVQRAL 138          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.107e-14
Identity = 42/121 (34.71%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIIL--ITVGNEVMISNDQNLISQL-LPAMTNMQNAL 504
            IGVN+G  A +  PPA   +LL+   IQK++L+ AD AI+KAL+ TG+ +++G  +  +  LA    AA +W++ NV     ++ + +  + VGNE  +         + LPA+ N+Q+A+
Sbjct:   27 IGVNWGSQARHPLPPATVVRLLRENGIQKVKLFEADSAILKALSRTGIQVMVGIPNDLLAPLAGSVAAAERWVSQNVSAHVSSNGVDIRYVAVGNEPFLKAFNGTFEGITLPALQNIQSAI 147          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13F_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GLB OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-14
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            IGV YG + +NLP      +L +S +I +LRLY  +   ++AL  + + +++G  + D+  +AS    A  W+  NV  F+P  KI  I VGNE+  ++    L S L PAM N+  A+
Sbjct:   35 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAI 153          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13E_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform GGIB50 OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-14
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            IGV YG + +NLP      +L +S +I +LRLY  +   ++AL  + + +++G  + D+  +AS    A  W+  NV  F+P  KI  I VGNE+  ++    L S L PAM N+  A+
Sbjct:   35 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAI 153          
The following BLAST results are available for this feature:
BLAST of CX290861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GUB2_HORVU8.395e-1536.44Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13B_MAIZE8.395e-1540.68Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13A_ARATH1.096e-1436.44Glucan endo-1,3-beta-glucosidase, acidic isoform O... [more]
E13D_TOBAC1.870e-1436.44Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13L_TOBAC3.190e-1436.44Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13G_TOBAC4.166e-1434.75Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13C_HORVU4.166e-1438.98Glucan endo-1,3-beta-glucosidase GIII OS=Hordeum v... [more]
E135_ARATH7.107e-1434.71Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E13F_TOBAC9.282e-1435.29Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13E_TOBAC9.282e-1435.29Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]

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Properties
Property NameValue
Genbank descriptionC03001A04Rv OF1 Citrus clementina cDNA clone C03001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290861 ID=CX290861; Name=CX290861; organism=Citrus clementina; type=EST; length=506bp
CAAGGCCACAAGCAACAACACATCACAACAAATTTCACTTTCTTCTCCAT
CTATTTCTCTCTGTCCATGGCCAACTCCAACTCCTCACTCTTCCTCTTCG
TCTCTCTCCTCCTCTTTCAAGTTCTTCACTTCTCAAGTTCGCAGTCATTC
ATCGGAGTGAACTACGGCCAAGTAGCGGATAACCTGCCCCCGCCGGCGGC
TACAGCGAAGCTTCTGCAATCGACTTCTATACAGAAATTGAGGCTCTACG
GTGCAGATCCGGCCATCATCAAAGCACTAGCAAACACTGGGGTCGGTATT
GTAATTGGCGCTTCCAGTGGAGATATTCCGGCTCTCGCTTCTGATCCCAA
CGCCGCTACTCAGTGGATCAACTCAAACGTGTTGCCTTTTTACCCCGCCA
GCAAAATCATTCTCATCACCGTTGGGAATGAGGTGATGATATCAAACGAC
CAAAATCTAATCAGTCAGCTTCTCCCGGCAATGACAAATATGCAAAACGC
TCTCAA
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