CX290861

Overview
NameCX290861
Unique NameCX290861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig327 contig Ccv1_Contig327:1..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_TOBAC (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana tabacum PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-14
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            IGV YG + +NLP      +L +S +I +LRLY  +   ++AL  + + +++G  + D+  +AS    A  W+  NV  F+P  KI  I VGNE+  ++    L S L PAM N+  A+
Sbjct:   36 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAI 154          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_NICPL (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Nicotiana plumbaginifolia GN=GN2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.282e-14
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            IGV YG + +NLP      +L +S +I +LRLY  +   ++AL  + + +++G  + D+  +AS    A  W+  NV  F+P  KI  I VGNE+  ++    L S L PAM N+  A+
Sbjct:   35 IGVCYGMLGNNLPNHWEVIQLYKSRNIGRLRLYDPNHGALQALKGSNIEVMLGLPNSDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSYLTSFLTPAMVNIYKAI 153          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_SOLLC (Glucan endo-1,3-beta-glucosidase B OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.212e-13
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            IGV YG + +NLP  +   +L +S +I++LRLY  +   + AL  + + +++G  + D+  ++S    A  W+  NV  F+P  KI  I VGNE+  ++   NL    +PA+ N+  A+
Sbjct:   27 IGVCYGMMGNNLPSHSEVIQLYKSRNIRRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHISSGMEHARWWVQKNVRDFWPHVKIKYIAVGNEISPVTGTSNLAPFQVPALVNIYKAI 145          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13A_SOLLC (Glucan endo-1,3-beta-glucosidase A OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.583e-13
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLL-PAMTNMQNAL 504
            IGV YG++A+NLP      KL  S +I+K+R+Y  +  +  AL  + + I++   + D+ ALA +P+    W+  N+   +P  K   I VGNEV    D    ++ + PAM N+ NAL
Sbjct:   26 IGVCYGKIANNLPSDQDVIKLYNSNNIKKMRIYFPETNVFNALKGSNIEIILDVPNQDLEALA-NPSKRQGWVQDNIRNHFPDVKFKYIAVGNEVDPGRDSGKYARFVGPAMENIYNAL 143          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E132_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 2 OS=Solanum tuberosum GN=GLUB2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            +GV YG + +NLP  +   +L +S +I +LRLY  +   + AL  + + +++G  + D+  +AS    A  W+  NV  F+P  KI  I VGNE+  ++   +L S  +PA+ N+  A+
Sbjct:   27 LGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNQGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAV 145          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E131_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 1 (Fragment) OS=Solanum tuberosum GN=GLUB1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.701e-13
Identity = 39/119 (32.77%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            +GV YG + +NLP  +   +L +S +I +LRLY  +   + AL  + + +++G  + D+  +AS    A  W+  NV  F+P  KI  I VGNE+  ++   +L S  +PA+ N+  A+
Sbjct:    1 LGVCYGMMGNNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAV 119          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13E_HORVU (Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.527e-13
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  154 GVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGD-IPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            GV YG V DNLP  +   +L +S +I  +R+Y  D   + AL  +G+ +++     D +  L  DP+ A  W+ SNV  +YP   I  I VGNEV  + D  +I   L AM N+ NAL
Sbjct:    6 GVCYGMVGDNLPSRSDVVQLYKSRNIHAMRIYNPDQEALTALRGSGIFLILDVGGVDEVRRLGRDPSYAAGWVRSNVQAYYPDVLIRYIAVGNEVP-AGDTGII---LLAMQNVHNAL 119          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.286e-12
Identity = 37/120 (30.83%), Postives = 69/120 (57.50%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQN--LISQLLPAMTNMQNAL 504
            +GV YG   +NLPP +    L + ++I ++R+Y  + A+++AL  + + +++G  + D+ +L ++P+ A  W+  NV  F+ +     I VGNE+   N     L   +LPAM N+ +A+
Sbjct:   38 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDLQSL-TNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIHDAI 156          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.900e-12
Identity = 33/117 (28.21%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  154 GVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            GV YG++ +NLP P     L    +I+++R+YG  P +++AL  + + +++   + ++  LAS  + A +W+  N+  +    +   ++VGNEV    + +    L+PA+ N+Q A+
Sbjct:   35 GVCYGRLGNNLPTPQEVVALYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEV--KPEHSFAQFLVPALENIQRAI 149          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.093e-12
Identity = 36/122 (29.51%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPAS---KIILITVGNEVMISNDQNLISQ-LLPAMTNMQNAL 504
            +G+N+G  A +  PP+   +LL+S  I K++L+ ADP +++AL+ + +G+ IG  +  + +L +    A  W++ NV  ++      +I  + VG E  + +  N     ++ A  N+QNAL
Sbjct:   26 VGINWGTEASHPLPPSKVVELLKSNGIVKVKLFDADPKVLRALSGSNIGVTIGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMNIQNAL 147          
The following BLAST results are available for this feature:
BLAST of CX290861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
E13B_TOBAC9.282e-1435.29Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_NICPL9.282e-1435.29Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13B_SOLLC1.212e-1332.77Glucan endo-1,3-beta-glucosidase B OS=Solanum lyco... [more]
E13A_SOLLC1.583e-1335.29Glucan endo-1,3-beta-glucosidase A OS=Solanum lyco... [more]
E132_SOLTU2.068e-1332.77Glucan endo-1,3-beta-glucosidase, basic isoform 2 ... [more]
E131_SOLTU2.701e-1332.77Glucan endo-1,3-beta-glucosidase, basic isoform 1 ... [more]
E13E_HORVU3.527e-1338.14Glucan endo-1,3-beta-glucosidase GV OS=Hordeum vul... [more]
E13B_HEVBR2.286e-1230.83Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
E13A_SOYBN3.900e-1228.21Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E139_ARATH5.093e-1229.51Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC03001A04Rv OF1 Citrus clementina cDNA clone C03001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290861 ID=CX290861; Name=CX290861; organism=Citrus clementina; type=EST; length=506bp
CAAGGCCACAAGCAACAACACATCACAACAAATTTCACTTTCTTCTCCAT
CTATTTCTCTCTGTCCATGGCCAACTCCAACTCCTCACTCTTCCTCTTCG
TCTCTCTCCTCCTCTTTCAAGTTCTTCACTTCTCAAGTTCGCAGTCATTC
ATCGGAGTGAACTACGGCCAAGTAGCGGATAACCTGCCCCCGCCGGCGGC
TACAGCGAAGCTTCTGCAATCGACTTCTATACAGAAATTGAGGCTCTACG
GTGCAGATCCGGCCATCATCAAAGCACTAGCAAACACTGGGGTCGGTATT
GTAATTGGCGCTTCCAGTGGAGATATTCCGGCTCTCGCTTCTGATCCCAA
CGCCGCTACTCAGTGGATCAACTCAAACGTGTTGCCTTTTTACCCCGCCA
GCAAAATCATTCTCATCACCGTTGGGAATGAGGTGATGATATCAAACGAC
CAAAATCTAATCAGTCAGCTTCTCCCGGCAATGACAAATATGCAAAACGC
TCTCAA
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