CX290861

Overview
NameCX290861
Unique NameCX290861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig327 contig Ccv1_Contig327:1..506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.652e-12
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV  G V D+LPP A    L ++ +I ++RLY  +PA ++AL  + + +++G  + ++  +A     A  W+ +NV   Y   K   I VGNEV  S+  +    L+PAM N+Q A+
Sbjct:   40 IGVCNGMVGDDLPPQAEVVALYKTNNIPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVRN-YANVKFKYIAVGNEVKPSD--SFAQFLVPAMRNIQEAI 154          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.354e-11
Identity = 37/118 (31.36%), Postives = 62/118 (52.54%), Query Frame = 1
Query:  151 IGVNYGQVADNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVMISNDQNLISQLLPAMTNMQNAL 504
            IGV +GQ+ +N+P P+    + +  SI ++R+YG +P  + AL  + +  ++   +GD+  LA     A  W+  NV   Y   +   I+VGNEV     +   + L+ AM N+  AL
Sbjct:   27 IGVCFGQMGNNIPNPSEVVAMFKQYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQK-YNDVRFKYISVGNEV--KPGEPGAAALIQAMQNIDRAL 141          
BLAST of CX290861 vs. ExPASy Swiss-Prot
Match: E133_SOLTU (Glucan endo-1,3-beta-glucosidase, basic isoform 3 (Fragment) OS=Solanum tuberosum GN=GLUB3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 35/110 (31.82%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  178 DNLPPPAATAKLLQSTSIQKLRLYGADPAIIKALANTGVGIVIGASSGDIPALASDPNAATQWINSNVLPFYPASKIILITVGNEVM-ISNDQNLISQLLPAMTNMQNAL 504
            +NLP  +   +L +S +I +LRLY  +   + AL  + + +++G  + D+  +AS    A  W+  NV  F+P  KI  I VGNE+  ++   +L S  +PA+ N+  A+
Sbjct:    1 NNLPSHSEVIQLYKSRNIGRLRLYDPNHGALNALRGSNIEVILGLPNVDVKHIASGMEHARWWVQKNVKDFWPDVKIKYIAVGNEISPVTGTSSLTSFQVPALVNIYKAI 110          
The following BLAST results are available for this feature:
BLAST of CX290861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
E13B_PRUPE6.652e-1234.75Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13B_BRACM7.354e-1131.36Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E133_SOLTU9.605e-1131.82Glucan endo-1,3-beta-glucosidase, basic isoform 3 ... [more]

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Properties
Property NameValue
Genbank descriptionC03001A04Rv OF1 Citrus clementina cDNA clone C03001A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290861 ID=CX290861; Name=CX290861; organism=Citrus clementina; type=EST; length=506bp
CAAGGCCACAAGCAACAACACATCACAACAAATTTCACTTTCTTCTCCAT
CTATTTCTCTCTGTCCATGGCCAACTCCAACTCCTCACTCTTCCTCTTCG
TCTCTCTCCTCCTCTTTCAAGTTCTTCACTTCTCAAGTTCGCAGTCATTC
ATCGGAGTGAACTACGGCCAAGTAGCGGATAACCTGCCCCCGCCGGCGGC
TACAGCGAAGCTTCTGCAATCGACTTCTATACAGAAATTGAGGCTCTACG
GTGCAGATCCGGCCATCATCAAAGCACTAGCAAACACTGGGGTCGGTATT
GTAATTGGCGCTTCCAGTGGAGATATTCCGGCTCTCGCTTCTGATCCCAA
CGCCGCTACTCAGTGGATCAACTCAAACGTGTTGCCTTTTTACCCCGCCA
GCAAAATCATTCTCATCACCGTTGGGAATGAGGTGATGATATCAAACGAC
CAAAATCTAATCAGTCAGCTTCTCCCGGCAATGACAAATATGCAAAACGC
TCTCAA
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