CX293823

Overview
NameCX293823
Unique NameCX293823
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length469
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14246 contig Ccv1_Contig14246:72..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E +++S++  +   +KE N  + +++ + S   I   VL  L + R++V++SSGP  VV   S +D++ +  G  V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE
Sbjct:   23 LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPE 158          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E +++S++  +   +KE N  + +++ + S   I   VL  L + R++V++SSGP  VV   S +D++ +  G  V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE
Sbjct:   23 LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPE 158          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E +++S++  +   +KE N  + +++ + S   I   VL  L + R++V++SSGP  VV   S +D++ +  G  V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE
Sbjct:   23 LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPE 158          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E +++S++  +   +KE N  + +++ + S   I   VL  L + R++V++SSGP  VV   S +D++ +  G  V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE
Sbjct:   23 LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPE 158          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_SULIA (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.27) GN=pan PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.331e-20
Identity = 50/136 (36.76%), Postives = 83/136 (61.03%), Query Frame = 3
Query:   60 IESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +E +++S++  +   +KE N  + +++ + S   I   VL  L + R++V++SSGP  VV   S +D++ +  G  V L+    TI+  LP++ DP+V  M   +  NV+YS +GGL +QI+ELRE +ELPL  PE
Sbjct:   23 LEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPE 158          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.962e-20
Identity = 52/146 (35.62%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   30 YRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            Y KK +  +++E +VR+++ +    ++E ++   ++  L+      G ++  LD +R IV+  +GPR+VV     +++E L  G RV LD  T+ I+  LP E DP V      +   VSY+ +GGL  Q++ELRE+IELPL +PE
Sbjct:   20 YLKKRI--RQLELQVRTLEADKERLERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPE 163          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.026e-19
Identity = 50/153 (32.68%), Postives = 85/153 (55.56%), Query Frame = 3
Query:    9 RRNAMTEYRKKLLQHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            +RN M + RK       +E     ++       +E      +++  ++   +I  V   LD+ R+ VK+++GP +V+     +D+++L  G RV L+  T +I+  LP E DPVV  M  E+  +VSY  +GGL +Q+RE++E++ELPL  PE
Sbjct:   30 KRNLMWKIRK-------LEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVLDDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPE 175          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.646e-19
Identity = 48/140 (34.29%), Postives = 80/140 (57.14%), Query Frame = 3
Query:   48 QHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            Q +++ES  R V+      ++E  K + +++ L+S   +IG V   +DN R+IV++S+GPR++V     +D + L  G R  L+  +L I+  LP   D  +Y M   +    +Y  +GGL  QI E+RE++ELPL  P+
Sbjct:   38 QFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQ 177          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_UNCMA (Proteasome-activating nucleotidase OS=Uncultured methanogenic archaeon RC-I GN=pan PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.455e-19
Identity = 45/140 (32.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   48 QHKEIESRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            ++++IE   +SV+      ++E  K   +L  L++   I+G +L  + N ++I+K+S+GP++VV     ++ +++  G +V L+  +L ++  LP   DP V  M   D   + Y ++GGL  QI EL+E++ELPL+ PE
Sbjct:   44 EYRKIELEKKSVENKKVQYEREIRKLTSELDRLKTPPLIVGTILDVMANGKMIIKSSTGPKFVVNSSQFINSKEVYPGAKVALNQQSLAVIEVLPTVKDPSVLGMEVVDSPEIDYQSIGGLEAQINELKETVELPLLKPE 183          
BLAST of CX293823 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.455e-19
Identity = 53/150 (35.33%), Postives = 83/150 (55.33%), Query Frame = 3
Query:   27 EYRKKLLQHKEIE---SRVRSVKENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPE 467
            E R++    KE+E        ++E LR  +    K   DL+ ++    I+G V   LD+ R+IVK+S+GP++V      VD+ +L  G  V L+  ++ ++  LP E D  V  M  ++  +VSY  +GGL +QIRE+RE +E PL  PE
Sbjct:   54 EARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPE 203          
The following BLAST results are available for this feature:
BLAST of CX293823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PSMR_SULIN5.331e-2036.76Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM5.331e-2036.76Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL5.331e-2036.76Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK5.331e-2036.76Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIA5.331e-2036.76Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_THEON6.962e-2035.62Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METTH2.026e-1932.68Proteasome-activating nucleotidase OS=Methanobacte... [more]
PSMR_METMJ2.646e-1934.29Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_UNCMA3.455e-1932.14Proteasome-activating nucleotidase OS=Uncultured m... [more]
PSMR_METKA3.455e-1935.33Proteasome-activating nucleotidase OS=Methanopyrus... [more]

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Properties
Property NameValue
Genbank descriptionC05001B03SK FlavSen1 Citrus clementina cDNA clone C05001B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293823 ID=CX293823; Name=CX293823; organism=Citrus clementina; type=EST; length=469bp
CCGTTAGACGCCGTAATGCCATGACGGAGTACCGTAAGAAGCTACTCCAG
CACAAAGAAATCGAATCTAGAGTTCGATCTGTTAAGGAGAATTTGAGAGC
TGCAAAGAAGGAGTTCAACAAAACAGAAGATGATTTGAAGTCTCTTCAAA
GTGTTGGGCAGATCATTGGAGAAGTTCTCAGACCTCTTGACAATGAACGC
TTGATTGTTAAAGCTAGCAGCGGGCCCCGTTATGTGGTTGGATGCCGCAG
CAAAGTGGATAAAGAGAAGTTGACTTCGGGAACAAGAGTTGTTCTTGATA
TGACAACGCTCACAATCATGCGAGCTCTTCCTCGTGAAGTTGATCCGGTT
GTATATAACATGTTGCATGAAGATCCGGGTAATGTTAGCTATTCGGCTGT
GGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGAATCTATTGAGCTAC
CTTTGATGAATCCTGAGCT
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