CX293826

Overview
NameCX293826
Unique NameCX293826
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig326 contig Ccv1_Contig326:24..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB21_RAT (Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 63/154 (40.91%), Postives = 98/154 (63.64%), Query Frame = 3
Query:   75 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            A    +  + K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IWDTAGQER+H+L P+YYR +  AI+VYD+T++ SF++ K WV+EL+      + + + GNK DL   R V+ +EA++YA+  G     TSAK
Sbjct:    9 AAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB21_MOUSE (Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 63/154 (40.91%), Postives = 98/154 (63.64%), Query Frame = 3
Query:   75 ATTGNKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            A    +  + K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IWDTAGQER+H+L P+YYR +  AI+VYD+T++ SF++ K WV+EL+      + + + GNK DL   R V+ +EA++YA+  G     TSAK
Sbjct:    9 AAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB21_BOVIN (Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 63/144 (43.75%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IWDTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK DL   R V+ +EA++YA+  G     TSAK
Sbjct:   18 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVDLEKERHVSIQEAESYAESVGAKHYHTSAK 161          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.850e-29
Identity = 63/146 (43.15%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDA-RKVTAEEAQAYAQENGLFFMETSAKT 539
            KL+L+GD G GKS L+LRF  G F     +TIG  F  +T+ ++   +K +IWDTAGQER+ ++   YYRGA   ++VYD+T+++SF   + W++ ++   + N+   L GNKAD+ ++ R V   + QA A E G+ F ETSAKT
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKT 162          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T
Sbjct:   10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T
Sbjct:   10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 64/145 (44.14%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K +++G+ G GKS L+ +F++ +F +    TIG  F S+ + V    VK +IWDTAGQER+ S+   YYRGAA A++VYDIT++ ++     W+ + +   + N+V+ L GNK DL   R+VT  EA  +AQEN L F+ETSA T
Sbjct:   10 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALT 154          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 63/152 (41.45%), Postives = 99/152 (65.13%), Query Frame = 3
Query:   87 NKNINAKLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            N ++  K++LLGD G GK+  +++F  G F+     +T+G    ++ + V+ A VK +IWDTAGQER+ S+   YYR A A +++YDITNQ+SF+  + W+ E+      ++V+ L GNKAD+   R + +E+ +  A+E G+ FMETSAKT
Sbjct:   25 NYDLTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKT 176          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 65/146 (44.52%), Postives = 96/146 (65.75%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQE-STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAKT 539
            K++L+GD G GK+ L++RF  G F+     ST+G  F ++ + V+   VK +IWDTAGQER+ S+   YYR A A +++YD+TN+ASF+  + W+ E+Q     ++V+ L GNK D    R V  E+A+  A++ GL FMETSAKT
Sbjct:   65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKT 210          
BLAST of CX293826 vs. ExPASy Swiss-Prot
Match: RAB21_CANFA (Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 63/144 (43.75%), Postives = 95/144 (65.97%), Query Frame = 3
Query:  105 KLVLLGDVGAGKSSLVLRFVKGQFIEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVTAEEAQAYAQENGLFFMETSAK 536
            K+VLLG+   GK+SLVLR+ + +F +   +T+ A+F ++ L +    V   IWDTAGQER+H+L P+YYR +  AI+VYDIT++ SF++ K WV+EL+      + + + GNK DL   R V+ +EA++YA+  G     TSAK
Sbjct:   19 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAK 162          
The following BLAST results are available for this feature:
BLAST of CX293826 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB21_RAT1.850e-2940.91Ras-related protein Rab-21 OS=Rattus norvegicus GN... [more]
RAB21_MOUSE1.850e-2940.91Ras-related protein Rab-21 OS=Mus musculus GN=Rab2... [more]
RAB21_BOVIN1.850e-2943.75Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 ... [more]
ARA3_ARATH1.850e-2943.15Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB4A_RAT2.416e-2944.14Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_MOUSE2.416e-2944.14Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB4A_HUMAN2.416e-2944.14Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB37_MOUSE2.416e-2941.45Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB26_BOVIN2.416e-2944.52Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB21_CANFA2.416e-2943.75Ras-related protein Rab-21 OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05001B06SK FlavSen1 Citrus clementina cDNA clone C05001B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293826 ID=CX293826; Name=CX293826; organism=Citrus clementina; type=EST; length=546bp
TTTTTTTTTTCCTTAATTTCGTCTCTAACCCTGCGATCCAATTTTGATTC
GGTCTTCGATCAGAGCACCCCATGGCCACCACTGGAAACAAAAACATCAA
TGCTAAATTGGTGCTGCTTGGAGATGTTGGAGCTGGAAAGTCTAGTCTTG
TACTGCGCTTTGTTAAAGGCCAATTCATTGAGTTTCAGGAATCAACCATT
GGAGCTGCCTTTTTCTCACAAACATTAGCTGTAAATGATGCTACTGTAAA
ATTTGAGATTTGGGATACAGCAGGACAAGAGAGATACCATAGCTTGGCTC
CAATGTACTATAGAGGAGCTGCCGCAGCAATTATTGTGTACGATATAACA
AATCAAGCCTCATTTGAGCGTGCTAAGAAATGGGTCCAAGAACTTCAGGC
ACAAGGCAATCCAAATATGGTTATGGCACTTGCTGGTAACAAAGCTGACT
TGTTGGATGCGAGGAAGGTCACGGCAGAGGAAGCACAAGCTTATGCCCAG
GAAAATGGCCTATTCTTTATGGAAACCTCTGCAAAAACAGCAACCA
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