CX293827

Overview
NameCX293827
Unique NameCX293827
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12761 contig Ccv1_Contig12761:1352..1836. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX293827 vs. ExPASy Swiss-Prot
Match: AMYB_SECCE (Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.303e-27
Identity = 67/136 (49.26%), Postives = 85/136 (62.50%), Query Frame = 3 
Query:   33 SHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQKAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDKQMCAFTYLRMNPHLFQPDNWRQFVAFVKKMN 419
            SHA E+TAGYYN   RD Y PIA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA  +  + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +  N+  F  FV +M+
Sbjct:    1 SHAAEVTAGYYNLHDRDDYRPIARMLTRHHASLNFTCAEMRDSEQSSQAMSAPEELVQQVWSAGWREGLNIACENALPRYDPTAYNTILRNARPHGINHSSPTEHKLFGFTYLRLSNQLLEGQNYVNFKTFVDRMH 136
The following BLAST results are available for this feature:
BLAST of CX293827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
AMYB_SECCE1.303e-2749.26Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05001B08SK FlavSen1 Citrus clementina cDNA clone C05001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293827 ID=CX293827; Name=CX293827; organism=Citrus clementina; type=EST; length=485bp
TTGCAGGAATCCACTGGCACTATGGGTCTAGGTCCCATGCCCCTGAGCTC
ACAGCTGGATATTACAATACACGATTCCGTGATGGTTACCTCCCTATTGC
CCAGATGCTAGCACGACATGGTGCCATATTCAACTTTACTTGCATAGAGA
TGCGTGATCATGAACAACCACAAGATGCCCTTTGTGCACCTGAGAAGCTA
GTCAAGCAAGTGGCTTCAGCAACTCAAAAAGCACACGTTCCACTGGCTGG
GGAAAATGCGTTGCCACGTTATGATGAATACGCTCACGAGCAGATCTTGC
GAGCAGCATCACTTGATGTAGACAAACAGATGTGTGCATTCACGTACTTG
AGGATGAATCCACATTTATTCCAACCCGATAATTGGAGACAGTTTGTGGC
ATTTGTGAAGAAGATGAATGAAGGGAAGGATGTTCACCGGTGTTTGGAGC
AAGTGGAGCGCGAAGCTGAGCACTTCGTCCATGTG
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