CX293884

Overview
NameCX293884
Unique NameCX293884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293884 vs. ExPASy Swiss-Prot
Match: FLS_MATIN (Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.964e-12
Identity = 32/88 (36.36%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   11 DGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFNPSHYTMMKPLDELINEQNPAKYRAYNWGKYFTSRL 274
            D  W  V+ IP++ I+NIGD I + SN  Y+ V H+  V+ EK R+S P+L +P++  ++ PL EL +E +P K++   +  Y  +++
Sbjct:  197 DDHWIEVEYIPSAIIVNIGDQIMMLSNGKYKNVLHKTTVDKEKTRMSWPVLVSPTYDMVVGPLPELTSEDDPPKFKPIAYKDYVHNKI 284          
BLAST of CX293884 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 33/93 (35.48%), Postives = 51/93 (54.84%), Query Frame = 2
Query:    8 SDGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFNPSHYTMMKPLDELINEQNPAKYRAYNWGKYFTSRLNSNL 286
            +DG W  V P   S+  N+GD +QV +N  +++V HRV+ N +K R+S+     PS    + PL  LI+ ++   Y  + W +Y  S  NS L
Sbjct:  219 NDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCKKSRVSMIYFAGPSLTQRIAPLTCLIDNEDERLYEEFTWSEYKNSTYNSRL 311          
BLAST of CX293884 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11
Identity = 31/92 (33.70%), Postives = 53/92 (57.61%), Query Frame = 2
Query:   11 DGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFNPSHYTMMKPLDELINEQNPAKYRAYNWGKYFTSRLNSNL 286
            DG W  V P  +S+ IN+GD +QV +N  +++V+HRV+ ++ + R+S+     P     + PL  L+ EQ+   Y+ + W +Y +S   S L
Sbjct:  230 DGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFTWSQYKSSAYKSKL 321          
BLAST of CX293884 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 32/89 (35.96%), Postives = 51/89 (57.30%), Query Frame = 2
Query:   11 DGEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFN-PSHYTMMKPLDELINEQNPAKYRAYNWGKYFTSRL 274
            +G+W   K +PNS I++IGD I++ SN  Y+++ HR VVN EK R S  I    P    ++KPL E + E  P ++    + ++   +L
Sbjct:  258 EGQWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGVVNKEKVRFSWAIFCEPPKEKIILKPLPETVTEAEPPRFPPRTFAQHMAHKL 346          
BLAST of CX293884 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.361e-11
Identity = 34/101 (33.66%), Postives = 55/101 (54.46%), Query Frame = 2
Query:   14 GEWARVKPIPNSYIINIGDCIQVWSNDAYETVEHRVVVNSEKERLSIPILFNPSHYTMMKPLDELINEQNPAKYRAYNWGKYFTSRLNSNLKKLDVENLQI 316
            G W +V+P+PNS +IN G  ++V +N   + VEHR   N  + RLS+     P+   ++ P +E ++E NP +YR    G++   +   N+  LD    QI
Sbjct:  231 GGWIKVQPVPNSLVINFGLQLEVVTNGYLKAVEHRAATNFAEPRLSVASFIVPADDCVVGPAEEFVSEDNPPRYRTLTVGEF---KRKHNVVNLDSSINQI 328          
The following BLAST results are available for this feature:
BLAST of CX293884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
FLS_MATIN4.964e-1236.36Flavonol synthase/flavanone 3-hydroxylase (Fragmen... [more]
G2OX1_ARATH6.483e-1235.48Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX2_ARATH3.217e-1133.70Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
LDOX_PETHY9.361e-1135.96Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
IDS2_HORVU9.361e-1133.66Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05002B01SK FlavRip1 Citrus clementina cDNA clone C05002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293884 ID=CX293884; Name=CX293884; organism=Citrus clementina; type=EST; length=563bp
GAAAAAATCAGACGGAGAATGGGCTCGCGTCAAACCCATCCCGAATTCTT
ATATCATAAATATCGGTGATTGTATTCAGGTATGGAGCAATGATGCTTAT
GAGACTGTGGAGCATAGGGTTGTGGTGAATTCTGAGAAGGAAAGGCTTTC
AATTCCAATTTTATTCAACCCATCTCATTACACAATGATGAAGCCATTAG
ATGAGCTTATAAATGAGCAAAATCCTGCTAAATACAGAGCATACAATTGG
GGAAAATATTTTACTTCTAGATTGAACAGCAATTTGAAGAAGCTTGATGT
TGAGAACCTTCAAATTTATCATTTCAAGGTACAAGAGTCAGCCAATAAGC
TGGATGGACTACTCTCTATTAACAAGTAATTAATTTAGTTATAAATTCCC
ACACCTATTGTGTTTCATCTTCGAATTCTACCTATATGTGAATATATTAT
GTCATGGGAATAATGGAATTTGCAATAATGTCATCTGCTAGTTGGTGTCA
GTGTCTCACATTAATAAATATTATTTCCGTAATGTGAAATCAATAAAAAA
AAAAAAAAAAAAA
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