CX293891

Overview
NameCX293891
Unique NameCX293891
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293891 vs. ExPASy Swiss-Prot
Match: KPYK_METEA (Pyruvate kinase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=pyk PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.157e-12
Identity = 44/154 (28.57%), Postives = 81/154 (52.60%), Query Frame = 3
Query:   48 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGD-VPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDGGMMSLAVKSKTKDLVKCIVVDGGELKSRR 506
            R+TKIV T+GP++ + EMI KL   G +V R+NMSH       + I++++    + + + + I++D +GP++R G  V    +L+ GQ F           D V + + + ++ +E    +L+D G + L V   ++      V  GG + +R+
Sbjct:    5 RRTKIVATLGPASDTPEMIEKLFHAGADVFRINMSHLAREKLPERIEVIRTIEREAK-RPIGILVDLQGPKLRLGTFVGDAAVLENGQTFVLDSDPTPGDTDRVFLPHPEILSALEPSHGILIDDGKLRLIVTEVSEGRAVTRVEVGGRISNRK 157          
BLAST of CX293891 vs. ExPASy Swiss-Prot
Match: KPYK_LACLA (Pyruvate kinase OS=Lactococcus lactis subsp. lactis GN=pyk PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.735e-12
Identity = 50/162 (30.86%), Postives = 76/162 (46.91%), Query Frame = 3
Query:   48 RKTKIVCTIGPST---------------------SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRS---GDVPQPIILKEGQEFNFTIKRGV-STEDTVSVNYD---DFVNDVEVGDILLVDGGMMSLAVKSK 449
            ++ KIV T+GP+                      +S + I  L EEG NV R N SHGDH      +  V     +     V  +LDTKGPE+R+    D    I +  G +F    K+G+ ST + +++N     D  +DVE+G  +L+D G + L++  K
Sbjct:    3 KRVKIVSTLGPAVEIRGGKKFGESGYWGESLDVEASAKNIAALIEEGANVFRFNFSHGDHPEQGARMATVHR-AEEIAGHKVGFLLDTKGPEMRTELFADGADAISVVTGDKFRVATKQGLKSTPELIALNVAGGLDIFDDVEIGQTILIDDGKLGLSLTGK 163          
BLAST of CX293891 vs. ExPASy Swiss-Prot
Match: KPYK_MYCPN (Pyruvate kinase OS=Mycoplasma pneumoniae GN=pyk PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.149e-11
Identity = 52/160 (32.50%), Postives = 82/160 (51.25%), Query Frame = 3
Query:   48 RKTKIVCTIGPSTSSREMIWKLA----------------------EEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV-PQPI-ILKEGQEFNFTIKRGVSTEDTVSVNYD----DFVNDVEVGDILLVDGGMMSLAVK 443
            ++TKI+ T GP+ + +  +W LA                      + G+ V RLN SHG+H      I +V++   +  +  V+IMLDT GPE+R  +  P+ + ILK+ +    T  + V+  +  SV+      + VNDV+VG  +LVD G +SL VK
Sbjct:    6 KRTKIIATCGPALTKK--LWTLAMLDDPAYAAMKAEAYANIENIIKNGVTVIRLNFSHGNHEEQAVRIKIVRDVAKKL-NLPVSIMLDTNGPEIRVFETAPEGLKILKDSEVVINTTTKEVAKNNQFSVSDASGTYNMVNDVKVGQKILVDDGKLSLVVK 162          
The following BLAST results are available for this feature:
BLAST of CX293891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
KPYK_METEA5.157e-1228.57Pyruvate kinase OS=Methylobacterium extorquens (st... [more]
KPYK_LACLA6.735e-1230.86Pyruvate kinase OS=Lactococcus lactis subsp. lacti... [more]
KPYK_MYCPN1.149e-1132.50Pyruvate kinase OS=Mycoplasma pneumoniae GN=pyk PE... [more]

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Properties
Property NameValue
Genbank descriptionC05002B09SK FlavRip1 Citrus clementina cDNA clone C05002B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293891 ID=CX293891; Name=CX293891; organism=Citrus clementina; type=EST; length=513bp
ATGGTCAGTGCACACCTGGAAAGGGAGTTGTAGGTCCAAATGCTAGAAGA
AAAACGAAGATAGTGTGTACAATTGGTCCTTCCACAAGCTCACGGGAAAT
GATATGGAAACTGGCAGAAGAGGGAATGAATGTGGCACGTTTAAATATGT
CGCATGGAGACCATGCATCACACCAGAAAACTATTGATCTCGTCAAAGAA
TACAATTCTCAATTTGAAGACAAGGCTGTAGCCATAATGCTGGACACCAA
GGGTCCTGAGGTTAGGAGTGGAGATGTACCTCAACCAATCATCCTGAAGG
AGGGTCAGGAATTTAATTTTACTATCAAAAGAGGGGTTAGCACAGAAGAT
ACTGTTAGTGTGAACTATGATGACTTTGTGAATGACGTAGAGGTTGGAGA
CATACTACTGGTAGATGGTGGAATGATGTCATTAGCTGTGAAGTCAAAGA
CAAAGGATCTGGTTAAATGCATAGTAGTTGATGGCGGTGAGCTAAAATCA
AGACGTCATTTAA
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