CX293892

Overview
NameCX293892
Unique NameCX293892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14178 contig Ccv1_Contig14178:38..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.250e-51
Identity = 91/142 (64.08%), Postives = 106/142 (74.65%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPC 505
            FDI N C  TVWAAA PGGGRQL+ GQ+W+I   PGT  ARIW RT C FD SG+G CETGDCNG+LECQGYG  PNTLAE+AL Q N  DF+D+S +DGFN+PMEFS  +  C R ++CTA I  +CP +LK  GGCN PC
Sbjct:   28 FDIVNQCTYTVWAAASPGGGRQLNSGQSWSINVNPGTVQARIWGRTNCNFDGSGRGNCETGDCNGMLECQGYGKPPNTLAEFALNQPN-QDFVDISLVDGFNIPMEFSPTNGGC-RNLRCTAPINEQCPAQLKTQGGCNNPC 167          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: NP24_SOLLC (Protein NP24 OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 9.456e-51
Identity = 89/144 (61.81%), Postives = 110/144 (76.39%), Query Frame = 2
Query:   83 DITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--VIKCTANILGECPNELKVPGGCNGPC 505
            ++ NNCP TVWAA+ P GGGR+L++GQTW I A  GTK ARIW RT C F+A+G+G C+TGDC G+L+C G+G  PNTLAEYAL QF+++DF D+S +DGFN+PM F+   PS  +   I CTANI GECP  LKVPGGCN PC
Sbjct:   25 EVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGTCQTGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKCHAIHCTANINGECPRALKVPGGCNNPC 168          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: ZEAM_MAIZE (Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 2.329e-49
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPS-CNRVIKCTANILGECPNELKVPGGCNGPCP 508
            F + N CP TVWAA+VP GGGRQL++G++W ITA  GT AARIWART C+FDASG+G C TGDC G+L+C GYG APNTLAEYALKQFN++DF D+S IDGFNVPM F     S C+R  +C  ++   CP EL+  G CN  CP
Sbjct:   24 FTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCRTGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACP 168          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: IAAT_MAIZE (Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 1.510e-48
Identity = 88/145 (60.69%), Postives = 107/145 (73.79%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPS-CNRVIKCTANILGECPNELKVPGGCNGPCP 508
            F + N CP TVWAA+VP GGGRQL++G++W ITA  GT AARIWART CQFDASG+G C TGDC G+++C GYG APNTLAEYALKQFN++DF D+S +DGFNVP  F     S C+R  +C  ++   CP EL+  G CN  CP
Sbjct:    3 FTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCQFDASGRGSCRTGDCGGVVQCTGYGRAPNTLAEYALKQFNNLDFFDISILDGFNVPYSFLPDGGSGCSRGPRCAVDVNARCPAELRQDGVCNNACP 147          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: THM2_THADA (Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.462e-43
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP-GGCNGPC 505
            F+I N C  TVWAAA  G      GGRQL+ G++WTI  EPGTK  +IWART C FD SG+G C TGDC GLL+C+ +G  P TLAE++L Q+   D+ID+SNI GFNVPM+FS  +  C R ++C A+I+G+CP +LK P GGCN  C
Sbjct:   25 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSGRGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYG-KDYIDISNIKGFNVPMDFSPTTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDAC 171          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: THM1_THADA (Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.111e-42
Identity = 82/149 (55.03%), Postives = 102/149 (68.46%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP-GGCNGPC 505
            F+I N C  TVWAAA  G      GGRQL+ G++WTI  EPGT   +IWART C FD SG G C+TGDC GLL C+ +G  P TLAE++L Q+   D+ID+SNI GFNVPM FS  +  C R ++C A+I+G+CP +LK P GGCN  C
Sbjct:    3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSGSGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYG-KDYIDISNIKGFNVPMNFSPTTRGC-RGVRCAADIVGQCPAKLKAPGGGCNDAC 149          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.200e-41
Identity = 77/143 (53.85%), Postives = 94/143 (65.73%), Query Frame = 2
Query:   77 KFDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPC 505
            KFDI N C  TVWAA +PGGG++LD+GQTWT+    GT +AR W RT C FDASGKG C+TGDC G L C   GA P TLAEY     +D D+ D+S +DGFN+P+  +  +  C     C A+I   CP+ELKV GGCN  C
Sbjct:   28 KFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGGQLSCTVSGAVPATLAEYTQ---SDQDYYDVSLVDGFNIPLAINPTNAQCT-APACKADINAVCPSELKVDGGCNSAC 166          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLP_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.469e-27
Identity = 61/112 (54.46%), Postives = 68/112 (60.71%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVS 412
            F ITN C  TVW AA P GGG QL  GQTWTI    GT + R+W RT C FD SG+G C TGDC G L C   G  P TLAE+ +      DF D+S IDG+NV M FS  S
Sbjct:   29 FTITNRCSFTVWPAATPVGGGVQLSPGQTWTINVPAGTSSGRVWGRTGCSFDGSGRGSCATGDCAGALSCTLSGQKPLTLAEFTIG--GSQDFYDLSVIDGYNVAMSFSCSS 138          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.770e-26
Identity = 52/83 (62.65%), Postives = 59/83 (71.08%), Query Frame = 2
Query:   77 KFDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 325
            KFDI N C  TVWAA +PGGG++LD+GQTWT+    GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   21 KFDIKNQCGYTVWAAGLPGGGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.345e-25
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 403
            F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS 130          
The following BLAST results are available for this feature:
BLAST of CX293892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PRR2_TOBAC3.250e-5164.08Pathogenesis-related protein R minor form OS=Nicot... [more]
NP24_SOLLC9.456e-5161.81Protein NP24 OS=Solanum lycopersicum PE=1 SV=2[more]
ZEAM_MAIZE2.329e-4962.07Zeamatin OS=Zea mays GN=Zlp PE=1 SV=2[more]
IAAT_MAIZE1.510e-4860.69Alpha-amylase/trypsin inhibitor OS=Zea mays PE=1 S... [more]
THM2_THADA1.462e-4355.70Thaumatin-2 OS=Thaumatococcus daniellii PE=2 SV=1[more]
THM1_THADA2.111e-4255.03Thaumatin-1 OS=Thaumatococcus daniellii PE=1 SV=1[more]
PRR3_JUNAS5.200e-4153.85Pathogenesis-related protein OS=Juniperus ashei PE... [more]
TLP_ORYSJ1.469e-2754.46Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
PRR3_JUNVI2.770e-2662.65Pathogenesis-related protein (Fragment) OS=Juniper... [more]
PR1C_HORVU2.345e-2551.38Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]

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Properties
Property NameValue
Genbank descriptionC05002B10SK FlavRip1 Citrus clementina cDNA clone C05002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293892 ID=CX293892; Name=CX293892; organism=Citrus clementina; type=EST; length=508bp
AATGAAGTTCGTTAAAGCTCTTCCCATTTCTTCTGCTCTTCTTATTATCA
TTTCCATCACCCTGACTCATGCTGCCAAATTCGATATCACAAACAATTGC
CCCGACACCGTCTGGGCCGCCGCTGTGCCCGGAGGCGGCAGGCAACTCGA
CAAGGGTCAAACATGGACCATCACCGCCGAGCCAGGCACAAAAGCAGCCC
GCATTTGGGCTCGAACCAAATGCCAGTTTGATGCTTCCGGCAAAGGCAAA
TGCGAGACCGGTGACTGTAACGGACTCCTCGAGTGCCAAGGCTACGGTGC
AGCACCTAACACCTTGGCCGAGTACGCGTTGAAGCAATTCAATGACATGG
ATTTCATTGACATGTCCAACATTGACGGATTCAATGTTCCCATGGAATTT
AGCTCTGTCTCTCCCTCATGCAACCGCGTGATCAAGTGCACTGCTAACAT
TCTTGGCGAGTGCCCGAATGAATTGAAGGTTCCTGGAGGATGTAACGGGC
CGTGCCCC
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