CX293892

Overview
NameCX293892
Unique NameCX293892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14178 contig Ccv1_Contig14178:38..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.345e-25
Identity = 56/109 (51.38%), Postives = 70/109 (64.22%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 403
            F+I NNC  T+W A +P GGG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGSTIWPAGIPVGGGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLP_WHEAT (Thaumatin-like protein PWIR2 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.000e-25
Identity = 57/109 (52.29%), Postives = 69/109 (63.30%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS 403
            F+I NNC  T+W A +P GGG  L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAEY +   +  DF D+S IDGFN+ M+FS
Sbjct:   23 FNIKNNCGFTIWPAGIPVGGGFALGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEYTIGGGSTQDFYDISVIDGFNLAMDFS 130          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.912e-25
Identity = 62/136 (45.59%), Postives = 82/136 (60.29%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP 484
            F ITNNC  TVW AA+P GGG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS    S    ++C  +    CP+    P
Sbjct:   24 FTITNNCGYTVWPAAIPVGGGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFSC---STGDALQCRDS---SCPDAYHQP 149          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.195e-23
Identity = 62/143 (43.36%), Postives = 79/143 (55.24%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVPG-------GGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEF--SSVSPSCNRVIKCTANILGECPNELKV 481
            F + NNCP TVWA  + G       GG +L  G +  +TA  G  + R WART C FDASG G+C TGDC G L C G G  P TLAE+ L      DF D+S +DG+NV +    S  S  C +   C +++   CP+ LKV
Sbjct:   26 FTLRNNCPTTVWAGTLAGQGPKLGDGGFELTPGASRQLTAPAGW-SGRFWARTGCNFDASGNGRCVTGDCGG-LRCNGGGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDC-KYAGCVSDLNAACPDMLKV 165          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.341e-23
Identity = 66/146 (45.21%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 499
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS    S    +KC       CP+    P       CNG
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFSC---STGVALKCRD---ANCPDAYHHPNDVATHACNG 159          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.858e-22
Identity = 65/146 (44.52%), Postives = 78/146 (53.42%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 499
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC       CP+    P       CNG
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKCRD---ANCPDAYHHPNDVATHACNG 159          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.427e-22
Identity = 65/146 (44.52%), Postives = 79/146 (54.11%), Query Frame = 2
Query:   80 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPG-----GCNG 499
            F ITNNC  TVW A +P GGG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS    S    +KC  +    CP+    P       CNG
Sbjct:   24 FRITNNCGFTVWPAGIPVGGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFSC---STGVALKCRDS---GCPDAYHHPNDVATHACNG 159          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 5.407e-22
Identity = 62/161 (38.51%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   77 KFDITNNCPDTVWAAAVPGGGR--------QLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQGYGAA-PNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFS--SVSPSCNRVIKCTANILGECPNELKVPG------GCNGPC 505
            KF  TN CP+TVW   + GGG         +L  G + ++T +    + R W R+ C  D+SGK KC TGDC +G + C G GA+ P +L E  L      DF D+S +DGFN+P++ +    S  CN    C ANI   CP EL   G      GC   C
Sbjct:   24 KFTFTNKCPNTVWPGTLTGGGGPQLLSTGFELASGASTSLTVQ-APWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNST-SCAANINTVCPAELSDKGSDGSVIGCKSAC 182          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.736e-18
Identity = 56/149 (37.58%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   77 KFDITNNCPDTVWAAAVPGG--------GRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQGYGAA-PNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKV 481
            K   TNNCP+TVW   + G         G +L    + ++ A P   + R W RT+C  DA+GK  CET DC +G + C G GA  P TL E  +      D+ D+S +DGFN+PM   SV+P       +   C AN+   CP  L+V
Sbjct:   26 KITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDA-PSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPM---SVAPQGGTGECKPSSCPANVNKVCPAPLQV 170          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.186e-18
Identity = 61/145 (42.07%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   92 NNCPDTVWAAAVPGGGRQLDK------GQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQG-YGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSP-----SCNRVIKCTANILGECPNELKVPG 487
            NNCP TVW A+   G  QL         Q       P   + R WART+C  DASGK  CET DC +G L C G  G  P TLAE+ +      DF D+S +DGFN+PM   SV+P     +C ++  C AN+   CP+EL+  G
Sbjct:   30 NNCPYTVWPASF--GNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPM---SVTPQGGTGTC-KMGSCAANVNLVCPSELQKIG 168          
The following BLAST results are available for this feature:
BLAST of CX293892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1A_HORVU2.345e-2551.38Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
TLP_WHEAT4.000e-2552.29Thaumatin-like protein PWIR2 OS=Triticum aestivum ... [more]
RST4_AVESA8.912e-2545.59Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PR5_ARATH2.195e-2343.36Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
RST1_AVESA8.341e-2345.21Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST2_AVESA1.858e-2244.52Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
RST3_AVESA2.427e-2244.52Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
TLP1_PYRPY5.407e-2238.51Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TP1A_MALDO4.736e-1837.58Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP2_PRUPE6.186e-1842.07Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC05002B10SK FlavRip1 Citrus clementina cDNA clone C05002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293892 ID=CX293892; Name=CX293892; organism=Citrus clementina; type=EST; length=508bp
AATGAAGTTCGTTAAAGCTCTTCCCATTTCTTCTGCTCTTCTTATTATCA
TTTCCATCACCCTGACTCATGCTGCCAAATTCGATATCACAAACAATTGC
CCCGACACCGTCTGGGCCGCCGCTGTGCCCGGAGGCGGCAGGCAACTCGA
CAAGGGTCAAACATGGACCATCACCGCCGAGCCAGGCACAAAAGCAGCCC
GCATTTGGGCTCGAACCAAATGCCAGTTTGATGCTTCCGGCAAAGGCAAA
TGCGAGACCGGTGACTGTAACGGACTCCTCGAGTGCCAAGGCTACGGTGC
AGCACCTAACACCTTGGCCGAGTACGCGTTGAAGCAATTCAATGACATGG
ATTTCATTGACATGTCCAACATTGACGGATTCAATGTTCCCATGGAATTT
AGCTCTGTCTCTCCCTCATGCAACCGCGTGATCAAGTGCACTGCTAACAT
TCTTGGCGAGTGCCCGAATGAATTGAAGGTTCCTGGAGGATGTAACGGGC
CGTGCCCC
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