CX293892

Overview
NameCX293892
Unique NameCX293892
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14178 contig Ccv1_Contig14178:38..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.378e-17
Identity = 61/155 (39.35%), Postives = 80/155 (51.61%), Query Frame = 2
Query:   86 ITNNCPDTVWAAAVPGGGRQ-LDKG----QTWTITAEPGTKA---ARIWARTKCQFDASGKGKCETGDCNGLLECQGY-GAAPNTLAEYALKQFN-DMDFIDMSNIDGFNVPM-----EFSSVSPSCNRVIKCTANILGECPNELKVPG-GCNGP 502
            + NNCP T+W A  P  G   L++G     + T  + P   A    RIWART C +   GK  C TGDC G +EC G  GAAP TLA++ L   + D     +S +DGFN+P+     E   V P    V+ C AN+L  CP  L+    G +GP
Sbjct:   33 LVNNCPYTIWPAIQPNAGHPVLERGGFTLHSLTHRSFPAPNAHWSGRIWARTGCNYQ-HGKFYCATGDCGGRIECDGLGGAAPATLAQFVLHHGHADFSTYGVSLVDGFNIPLTVTPHEGKGVCP----VVGCRANLLESCPAVLQFRSHGGHGP 182          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.933e-17
Identity = 59/149 (39.60%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   92 NNCPDTVWAAAVPGGGRQLDKGQTWTITAEPGTKAA-----------RIWARTKCQFDASGKGKCETGDC-NGLLECQGYGA-APNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKVPG 487
            NNCP  VW    PG      K Q  T   E  ++A+           R WART C  DASGK  C T DC +G + C G GA  P TLAE+ +      DF D+S +DGFN+PM   SV+P       +   C AN+   CP+EL+  G
Sbjct:   30 NNCPYMVW----PGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPM---SVTPQGGTGDCKTASCPANVNAVCPSELQKKG 171          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-16
Identity = 52/157 (33.12%), Postives = 74/157 (47.13%), Query Frame = 2
Query:   86 ITNNCPDTVWAAAV--------PGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQG-YGAAPNTLAEYAL-KQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN-RVIKCTANILGECPNELKV------PGGCNGPC 505
            + NNC ++VW   +          GG  L  G+   +    G  + R+W R  C FD+ G+G C TGDC G+L C G  GA P T+ E  L    + M F D+S +DGFN P+  ++V          C A++   CP+ L+V        GC   C
Sbjct:   33 MVNNCGESVWPGLLGTAGHPTPQSGGFHLGAGEEAALEVPAGW-SGRVWPRRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSAC 188          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.599e-16
Identity = 57/151 (37.75%), Postives = 75/151 (49.67%), Query Frame = 2
Query:   77 KFDITNNCPDTVWAAAVPGG--------GRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQGYGAA-PNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKVPG 487
            K   TN C  TVW   + G         G +L  G + ++ A P   + R + RT+C  DASGK  C T DC +G + C G GAA P TL E  +      DF D+S +DGFN+PM   SV+P       +   C A+I   CP  L+V G
Sbjct:   26 KITFTNKCSYTVWPGTLTGDQKPQLSLTGFELATGISRSVDA-PSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPM---SVAPQGGTGKCKASTCPADINKVCPAPLQVKG 172          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.394e-16
Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   77 KFDITNNCPDTVWAAAV--------PGGGRQLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDCN-GLLECQGYGAAPN-TLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN-RVIKCTANILGECPNELKVPG 487
            K   TNNCP T+W   +        P  G  L    + T+  +   K  R WART+C  + SGK  CET DC+ G + C G GA P  +L E  +     MDF D+S +DG+N+P+  ++   + + +   C AN+   CP EL+V G
Sbjct:   24 KITFTNNCPRTIWPGTLTSDQKPQLPNTGFVLASKASLTLGVQAPWKG-RFWARTRCTTN-SGKFTCETADCSTGQVACNGNGAIPPASLVEINIAANRGMDFYDVSLVDGYNLPVSVATRGGTGDCKATSCRANVNAVCPAELQVKG 169          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15
Identity = 51/140 (36.43%), Postives = 67/140 (47.86%), Query Frame = 2
Query:   92 NNCPDTVWAAAVPGGGRQLDKGQTWTITAE-------PGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGA-APNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSV--SPSCNRVIKCTANILGECPNELKV 481
            N C   VW    P  G+ L  G  + + A        P   + R W R  C FD SG+G C TGDC G L C G G   P TLAE  L    ++DF D+S +DG+N+ M    V  S  C+    C +++   CP  L+V
Sbjct:   27 NKCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLGP--ELDFYDVSLVDGYNLAMSIMPVKGSGQCS-YAGCVSDLNQMCPVGLQV 163          
BLAST of CX293892 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 49/140 (35.00%), Postives = 71/140 (50.71%), Query Frame = 2
Query:  104 DTVWAAAVPGGGR--------QLDKGQTWTITAEPGTKAARIWARTKCQFDASGKGKCETGDC-NGLLECQGYGAA-PNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCN----RVIKCTANILGECPNELKV 481
            +TVW   + G  +        +L    + ++ A P   + R W RT+C  DA+GK  CET DC +G + C G GA  P TL E  +      D+ D+S +DGFN+PM   SV+P       +   C AN+   CP +L+V
Sbjct:    1 NTVWPGTLTGDQKPQLSLTAFELASKASQSVDA-PSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPM---SVAPQGGTGECKPSSCPANVNMACPAQLQV 136          
The following BLAST results are available for this feature:
BLAST of CX293892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
OLP1_SOLLC1.378e-1739.35Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLP_PRUAV8.933e-1739.60Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLPH_ORYSJ1.167e-1633.12Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP1_PRUPE2.599e-1637.75Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_CASSA3.394e-1635.81Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLPH_ARATH1.685e-1536.43Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TP1B_MALDO5.419e-1435.00Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05002B10SK FlavRip1 Citrus clementina cDNA clone C05002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293892 ID=CX293892; Name=CX293892; organism=Citrus clementina; type=EST; length=508bp
AATGAAGTTCGTTAAAGCTCTTCCCATTTCTTCTGCTCTTCTTATTATCA
TTTCCATCACCCTGACTCATGCTGCCAAATTCGATATCACAAACAATTGC
CCCGACACCGTCTGGGCCGCCGCTGTGCCCGGAGGCGGCAGGCAACTCGA
CAAGGGTCAAACATGGACCATCACCGCCGAGCCAGGCACAAAAGCAGCCC
GCATTTGGGCTCGAACCAAATGCCAGTTTGATGCTTCCGGCAAAGGCAAA
TGCGAGACCGGTGACTGTAACGGACTCCTCGAGTGCCAAGGCTACGGTGC
AGCACCTAACACCTTGGCCGAGTACGCGTTGAAGCAATTCAATGACATGG
ATTTCATTGACATGTCCAACATTGACGGATTCAATGTTCCCATGGAATTT
AGCTCTGTCTCTCCCTCATGCAACCGCGTGATCAAGTGCACTGCTAACAT
TCTTGGCGAGTGCCCGAATGAATTGAAGGTTCCTGGAGGATGTAACGGGC
CGTGCCCC
back to top