CX293894

Overview
NameCX293894
Unique NameCX293894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig801 contig Ccv1_Contig801:191..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_BOSIN (Glucose-6-phosphate 1-dehydrogenase OS=Bos indicus GN=G6PD PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 39/88 (44.32%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 DRSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            + S L+L Y  RY   + PDAYERL+LD   G +  F+RSDEL  AW +FTP           P  Y YGSRGPV A  L  R   ++
Sbjct:  416 EESELDLTYGNRYKNVKFPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHHIEREKARPIPYVYGSRGPVEADELMKRVGFQY 503          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_YEAST (Glucose-6-phosphate 1-dehydrogenase OS=Saccharomyces cerevisiae GN=ZWF1 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 1.350e-11
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   28 LNLHYAARYSKE-IPDAYERLLLDAIEGERRLFIRSDELDAAWALFTP-XXXXXXXXXIIPEYYPYGSRGPVG 240
            LNL YA+RY    IP+AYE L+ DA+ G+   F+R DELD +W +FTP            PE YPYGSRGP G
Sbjct:  402 LNLTYASRYQDFWIPEAYEVLIRDALLGDHSNFVRDDELDISWGIFTPLLKHIERPDGPTPEIYPYGSRGPKG 474          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_SOLTU (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Solanum tuberosum GN=G6PDH PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 37/79 (46.84%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   19 RSHLNLHYAARYSKE-IPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYL 252
            +S L+L Y  RY    IP+AYERL+LD I G+++ F+R DEL AAW +FTP         + P  Y  GSRGP  A  L
Sbjct:  414 QSELDLSYGQRYQGVVIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDNGEVKPIPYKPGSRGPAEADEL 492          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_RAT (Glucose-6-phosphate 1-dehydrogenase OS=Rattus norvegicus GN=G6pdx PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 DRSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            + S L+L Y  RY   ++PDAYERL+LD   G +  F+RSDEL  AW +FTP           P  Y YGSRGP  A  L  R   ++
Sbjct:  416 EESELDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHKIDREKPQPIPYVYGSRGPTEADELMKRVGFQY 503          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_MACRO (Glucose-6-phosphate 1-dehydrogenase OS=Macropus robustus GN=G6PD PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 DRSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            + S L+L Y  RY   ++PDAYERL+LD   G +  F+RSDEL  AW +FTP           P  Y YGSRGP  A  L  R   ++
Sbjct:  416 EESELDLTYGNRYKDVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHHIEKEKTQPIAYVYGSRGPPEADELMKRVGFQY 503          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_DROYA (Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=Drosophila yakuba GN=Zw PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 36/89 (40.45%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   13 LDRSHLNLHYAARYSKE-IPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            ++ + L+L Y  RY    +PDAYERL+LD   G +  F+RSD+L  AW +FTP         I P  Y YGSRGP  A  +    N ++
Sbjct:  414 IEETELDLTYEHRYKDSYLPDAYERLILDVFCGSQMHFVRSDQLREAWRIFTPILHQIEREHIRPITYQYGSRGPKEADRMCEENNFKY 502          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_CRIGR (Glucose-6-phosphate 1-dehydrogenase OS=Cricetulus griseus GN=G6PD PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 DRSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            + S L+L Y  RY   ++PDAYERL+LD   G +  F+RSDEL  AW +FTP           P  Y YGSRGP  A  L  R   ++
Sbjct:  416 EESELDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHKIDQEKPQPIPYVYGSRGPTEADELMKRVGFQY 503          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD1_MOUSE (Glucose-6-phosphate 1-dehydrogenase X OS=Mus musculus GN=G6pdx PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 DRSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            + S L+L Y  RY   ++PDAYERL+LD   G +  F+RSDEL  AW +FTP           P  Y YGSRGP  A  L  R   ++
Sbjct:  416 EESELDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHKIDREKPQPIPYVYGSRGPTEADELMKRVGFQY 503          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_HUMAN (Glucose-6-phosphate 1-dehydrogenase OS=Homo sapiens GN=G6PD PE=1 SV=4)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 38/88 (43.18%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 DRSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            + S L+L Y  RY   ++PDAYERL+LD   G +  F+RSDEL  AW +FTP           P  Y YGSRGP  A  L  R   ++
Sbjct:  416 EESELDLTYGNRYKNVKLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPLLHQIELEKPKPIPYIYGSRGPTEADELMKRVGFQY 503          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_DROME (Glucose-6-phosphate 1-dehydrogenase OS=Drosophila melanogaster GN=Zw PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 1
Query:   13 LDRSHLNLHYAARYSKE-IPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            ++ + L+L Y  RY    +PDAYERL+LD   G +  F+RSDEL  AW +FTP         I P  Y YGSRGP  A       N ++
Sbjct:  420 IEETELDLTYEHRYKDSYLPDAYERLILDVFCGSQMHFVRSDELREAWRIFTPILHQIEKEHIRPITYQYGSRGPKEADRKCEENNFKY 508          
The following BLAST results are available for this feature:
BLAST of CX293894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
G6PD_BOSIN6.062e-1244.32Glucose-6-phosphate 1-dehydrogenase OS=Bos indicus... [more]
G6PD_YEAST1.350e-1150.68Glucose-6-phosphate 1-dehydrogenase OS=Saccharomyc... [more]
G6PD_SOLTU1.764e-1146.84Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_RAT1.764e-1143.18Glucose-6-phosphate 1-dehydrogenase OS=Rattus norv... [more]
G6PD_MACRO1.764e-1143.18Glucose-6-phosphate 1-dehydrogenase OS=Macropus ro... [more]
G6PD_DROYA1.764e-1140.45Glucose-6-phosphate 1-dehydrogenase (Fragment) OS=... [more]
G6PD_CRIGR1.764e-1143.18Glucose-6-phosphate 1-dehydrogenase OS=Cricetulus ... [more]
G6PD1_MOUSE1.764e-1143.18Glucose-6-phosphate 1-dehydrogenase X OS=Mus muscu... [more]
G6PD_HUMAN2.303e-1143.18Glucose-6-phosphate 1-dehydrogenase OS=Homo sapien... [more]
G6PD_DROME2.303e-1141.57Glucose-6-phosphate 1-dehydrogenase OS=Drosophila ... [more]

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Properties
Property NameValue
Genbank descriptionC05002C01SK FlavRip1 Citrus clementina cDNA clone C05002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293894 ID=CX293894; Name=CX293894; organism=Citrus clementina; type=EST; length=548bp
GCACGAGGGAGATTAGACCGTAGCCATCTAAACCTTCACTATGCAGCAAG
ATACTCAAAGGAGATTCCAGATGCATATGAGAGGCTTCTGCTGGATGCTA
TAGAAGGGGAAAGAAGACTATTTATCCGAAGTGATGAACTAGATGCTGCA
TGGGCGCTCTTCACTCCTCTTTTGAAGGAACTAGAAGAGAAAAAGATCAT
CCCTGAATACTATCCTTACGGAAGTCGTGGCCCTGTTGGGGCTCACTACC
TTGCCGCCAGATACAATGTCCGATGGGGTGACCTCGGTGTAGAGCAATAA
CTGCTATCAGTGATATTAGAAGAGCTAAAAGCTTATATTTATCATCCTAA
TTATTAGGCTGCATTAAGTTTGTATTTTGCCATATCGATAGATGAAGATA
GCACATTAAGTTTATGATCTTGTGAGATTTATTCTTTGCATTAAAAATCT
GCTTCTGTAATATTTTCTTCGTCCTACCATCTTTCCTGTTCCTTTTCTTC
TATCTTTTTGGGTCCAAAGTTTTAAGAGCAAATAGATTGAGTTTCTTA
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