CX293894

Overview
NameCX293894
Unique NameCX293894
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig801 contig Ccv1_Contig801:191..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_CERCA (Glucose-6-phosphate 1-dehydrogenase OS=Ceratitis capitata GN=ZW PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   13 LDRSHLNLHYAARYSKE-IPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            ++ + L+L Y  RY    +PDAYERL+LD   G +  F+RSDEL  AW +FTP         + P  Y +GSRGP  A    +  N ++
Sbjct:  428 IEETELDLTYEHRYKNSYLPDAYERLILDVFCGSQMHFVRSDELSEAWRIFTPVLNEIENNKVKPIPYVFGSRGPKEADQKTSENNFKY 516          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD5_ARATH (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=ACG9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.008e-11
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   19 RSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYL 252
            +S L+L Y  RY    IP+AYERL+LD I G+++ F+R DEL AAW +FTP         +    Y  GSRGP  A  L
Sbjct:  419 QSELDLSYKQRYQDVSIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHRIDKGEVKSVPYKQGSRGPAEADQL 497          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_TAKRU (Glucose-6-phosphate 1-dehydrogenase OS=Takifugu rubripes GN=g6pd PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = 1
Query:   16 DRSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYLAARYNVRW 276
            + + L+L Y +RY   ++PDAYERL+LD   G +  F+ SDEL  AW +FTP           P  Y YGSRGP  A  L  R   R+
Sbjct:  431 EETELDLTYKSRYKDVKLPDAYERLILDVFCGSQMHFVASDELREAWRIFTPLLHQIEKEKPKPIPYKYGSRGPAEADELEKRVGFRY 518          
BLAST of CX293894 vs. ExPASy Swiss-Prot
Match: G6PD_MEDSA (Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.929e-11
Identity = 36/79 (45.57%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   19 RSHLNLHYAARYSK-EIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPXXXXXXXXXIIPEYYPYGSRGPVGAHYL 252
            +S L+L Y  RY    IP+AYERL+LD I G+++ F+R DEL A+W +FTP         + P  Y  GSRGP  A  L
Sbjct:  418 QSELDLSYGQRYQGITIPEAYERLILDTIRGDQQHFVRRDELKASWQIFTPLLHKIDRGELKPVPYNPGSRGPAEADEL 496          
The following BLAST results are available for this feature:
BLAST of CX293894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
G6PD_CERCA3.008e-1139.33Glucose-6-phosphate 1-dehydrogenase OS=Ceratitis c... [more]
G6PD5_ARATH3.008e-1145.57Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]
G6PD_TAKRU3.929e-1142.05Glucose-6-phosphate 1-dehydrogenase OS=Takifugu ru... [more]
G6PD_MEDSA3.929e-1145.57Glucose-6-phosphate 1-dehydrogenase, cytoplasmic i... [more]

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Properties
Property NameValue
Genbank descriptionC05002C01SK FlavRip1 Citrus clementina cDNA clone C05002C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293894 ID=CX293894; Name=CX293894; organism=Citrus clementina; type=EST; length=548bp
GCACGAGGGAGATTAGACCGTAGCCATCTAAACCTTCACTATGCAGCAAG
ATACTCAAAGGAGATTCCAGATGCATATGAGAGGCTTCTGCTGGATGCTA
TAGAAGGGGAAAGAAGACTATTTATCCGAAGTGATGAACTAGATGCTGCA
TGGGCGCTCTTCACTCCTCTTTTGAAGGAACTAGAAGAGAAAAAGATCAT
CCCTGAATACTATCCTTACGGAAGTCGTGGCCCTGTTGGGGCTCACTACC
TTGCCGCCAGATACAATGTCCGATGGGGTGACCTCGGTGTAGAGCAATAA
CTGCTATCAGTGATATTAGAAGAGCTAAAAGCTTATATTTATCATCCTAA
TTATTAGGCTGCATTAAGTTTGTATTTTGCCATATCGATAGATGAAGATA
GCACATTAAGTTTATGATCTTGTGAGATTTATTCTTTGCATTAAAAATCT
GCTTCTGTAATATTTTCTTCGTCCTACCATCTTTCCTGTTCCTTTTCTTC
TATCTTTTTGGGTCCAAAGTTTTAAGAGCAAATAGATTGAGTTTCTTA
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