CX293983

Overview
NameCX293983
Unique NameCX293983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10443 contig Ccv1_Contig10443:14..531. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293983 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.289e-36
Identity = 80/163 (49.08%), Postives = 105/163 (64.42%), Query Frame = 2
Query:   20 MAKSDVKVLGAWPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKSIGSAHGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIA 508
            M  ++V +L    S F MR RIAL +K ++YE  EENL  KS LLL+ NPVHKKIP+LIHN KP+CESL I+EY+DE W    P +LPSDPY R+ ARFWA Y+D K++   + + S  G E +E A ++ IE    LE         K +FGG  +GF+D+A
Sbjct:    1 MESNNVVLLDFSGSSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCP-LLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKG-EDQEEAKKEFIEIFKTLEGEL----GNKTYFGGDNLGFVDVA 157          
BLAST of CX293983 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.950e-34
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 2
Query:   26 KSDVKVLGAWPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSDPYDRAVARFWAAYVDEKLFPALKSIGSAHGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFG 514
            K +VK+LG W SPF  R  +ALK+K + YE++EE L +KS LLL  NP+HKK+PVL+HN K + ES +I+EY+DE W  +   ILP DPY+R+ ARF+A  VDE++        +    + +E   EQ+ E ++ LE   V    GK +FGG  +GFLD   G
Sbjct:    4 KEEVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN--PILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELV----GKDYFGGKTVGFLDFVAG 160          
BLAST of CX293983 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.548e-32
Identity = 76/170 (44.71%), Postives = 107/170 (62.94%), Query Frame = 2
Query:   35 VKVLGAWPSPFVMRARIALKIKSVEYEFLEENLG-SKSELLLKSNPVHKKIPVLIHND-KPVCESLIIVEYVDEAWSSSGPS-----ILPSDPYDRAVARFWAAYVDEKLFPALKSIGSAHGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQI--GFLDIAFGC 517
            ++VLG   SPF  RAR+AL ++ V YE L+E LG  KS+ LL +NPV+ KIPVL+  D + +CES +IV+Y+++    SG +     +LP DPY+RA+ RFW A++D+K +PAL ++  A    A+  A E     L LLE+AF   S G+ FF G     G LD+A GC
Sbjct:    1 MRVLGGEVSPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGC 170          
BLAST of CX293983 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSJ (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. japonica GN=GSTU1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 4.059e-28
Identity = 73/171 (42.69%), Postives = 106/171 (61.99%), Query Frame = 2
Query:   26 KSDVKVLGAWPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILP-------SDPYDRAVARFWAAYVDEKLFPALKSIGSAHGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFF---GGSQIGFLDIA 508
            + ++ +L  W SPF  R RIA+  K +E+E+ EE+LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+  + P +LP          Y RA ARFWA YVD KL+     +    G E + AA  ++ E L  LE         + FF   GG ++GF+D+A
Sbjct:    4 EKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGT-PHLLPPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKG-EPQAAAGREMAEILRTLEAEL----GDREFFGGGGGGRLGFVDVA 168          
BLAST of CX293983 vs. ExPASy Swiss-Prot
Match: GSTU1_ORYSI (Probable glutathione S-transferase GSTU1 OS=Oryza sativa subsp. indica GN=GSTU1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.301e-28
Identity = 71/170 (41.76%), Postives = 106/170 (62.35%), Query Frame = 2
Query:   26 KSDVKVLGAWPSPFVMRARIALKIKSVEYEFLEENLGSKSELLLKSNPVHKKIPVLIHNDKPVCESLIIVEYVDEAWSSSGPSILPSD------PYDRAVARFWAAYVDEKLFPALKSIGSAHGAEAKEAAIEQLIEGLVLLEDAFVKCSKGKPFF---GGSQIGFLDIA 508
            + ++ +L  W SPF  R RIA+  K +E+E+ EE+LG+KS+LLL+SNPVH+KIPVL+H  +PV ESL+I++Y+D+A+  +   + P++       Y RA ARFWA YVD KL+     +    G E + AA  ++ E L  LE         + FF   GG ++GF+D+A
Sbjct:    4 EKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYLDDAFPGTPHLLSPANSGDADAAYARATARFWADYVDRKLYDCGSRLWRLKG-EPQAAAGREMAEILRTLEAEL----GDREFFGGGGGGRLGFVDVA 168          
The following BLAST results are available for this feature:
BLAST of CX293983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GSTX1_NICPL5.289e-3649.08Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTXA_ARATH4.950e-3445.40Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX2_MAIZE3.548e-3244.71Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
GSTU1_ORYSJ4.059e-2842.69Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]
GSTU1_ORYSI5.301e-2841.76Probable glutathione S-transferase GSTU1 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionC05004D07SK FlavRip1 Citrus clementina cDNA clone C05004D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293983 ID=CX293983; Name=CX293983; organism=Citrus clementina; type=EST; length=518bp
CTCGTGCCGAACAAAGAAAATGGCAAAAAGCGACGTGAAGGTTTTGGGTG
CGTGGCCAAGCCCATTTGTGATGAGGGCAAGAATCGCACTTAAGATCAAG
TCTGTGGAGTATGAGTTTCTGGAGGAGAATTTGGGATCCAAAAGCGAGCT
TCTGCTTAAATCAAACCCTGTTCACAAGAAAATCCCAGTTCTGATTCACA
ATGATAAGCCTGTTTGCGAATCTCTCATCATTGTCGAGTACGTGGATGAG
GCTTGGTCCTCTTCAGGTCCCTCTATTCTTCCTTCTGATCCTTATGACCG
TGCCGTTGCTCGTTTCTGGGCCGCTTATGTTGATGAGAAGTTGTTCCCTG
CCTTGAAAAGCATTGGTAGTGCACATGGAGCGGAAGCTAAGGAAGCTGCG
ATTGAGCAATTGATTGAAGGCTTGGTTTTGCTGGAGGATGCTTTTGTTAA
GTGTAGCAAAGGGAAGCCTTTCTTTGGTGGAAGCCAAATTGGGTTTCTTG
ACATTGCATTTGGTTGCT
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