CX294781

Overview
NameCX294781
Unique NameCX294781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length629
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10184 contig Ccv1_Contig10184:34..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 47/123 (38.21%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRL 585
            KGTTT+    K+GV+ A + RASMG  I+ ++  KI +I+ ++  T+AG  AD Q   + L  +  L+ + N  +IS+  A+ L ANIL+S R     V T++ G DE G  +Y +D  GG +
Sbjct:    8 KGTTTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFYPFIVQTLLGGVDENGAKIYSLDPSGGMI 130          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB8_PIG (Proteasome subunit beta type-8 (Fragment) OS=Sus scrofa GN=PSMB8 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1
Query:  412 RLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGH-GSLWIRFTYAY 627
            RL+ L N  RISV+ ASKL +N++Y YRGMGLS+G+MI GWD+ GPGLYYVD  G RL G+  S     TYAY
Sbjct:    1 RLYYLRNGARISVSAASKLXSNMMYQYRGMGLSMGSMICGWDKKGPGLYYVDENGTRLSGNMFSTGSGNTYAY 73          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSMB_METTE (Proteasome subunit beta OS=Methanosarcina thermophila GN=psmB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.433e-16
Identity = 40/127 (31.50%), Postives = 79/127 (62.20%), Query Frame = 1
Query:  208 KHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK 588
            K+ KGTTT+  +  +G+++A++ RA+MG +I+S++ KK+ +I+  +  T AG   D Q   R + ++ +L+++     +++ G + L++N L   R   + V  +I G D+ GPG+Y +D+ GG ++
Sbjct:    5 KYLKGTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLVSVESQLYKMRRDESMTIKGITTLMSNFLSRNRYYPMMVQLLIGGVDKNGPGIYSLDAMGGSIE 131          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 579
            KGTTT+  + K+GV++AAD RAS+G  I +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLANI+   +        ++ G+DE  P LY VD  GG
Sbjct:    9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEK-PKLYSVDMVGG 128          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGG 579
            KGTTT+  I  + V++A D RAS+G  ++ +  KK+ +I+ Y+  T+AG   D Q   R L  + +L+++   R I     + LL+NIL+S R        +I G+D   G  L+ +D  GG
Sbjct:    5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGG 126          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSMB_PYRAB (Proteasome subunit beta OS=Pyrococcus abyssi GN=psmB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 579
            KGTTT+  +  +GV++AAD RAS+G  + +++V KI +I+ ++    AG   D     R L  + +L+   + +R+SV   + LLAN+L   R +      ++ G+DE  P LY VD  GG
Sbjct:    9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEK-PRLYSVDMMGG 128          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSMB_PYRFU (Proteasome subunit beta OS=Pyrococcus furiosus GN=psmB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1
Query:  217 KGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 579
            KGTTT+  + KEGV++AAD+RAS+G  I +++V KI +I+ ++    AG   D     R L  +  L++    + +SV   + LLANIL   +        ++ G+DE  P L+ VD  GG
Sbjct:    9 KGTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLLKAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEK-PRLFSVDMVGG 128          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 1
Query:  175 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK------GHGSL 603
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L+  R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K      G GSL
Sbjct:   28 DFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSL 175          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 45/149 (30.20%), Postives = 73/149 (48.99%), Query Frame = 1
Query:  175 DEFQKDTKATLKHAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLK------GHGSL 603
            D  +K  K       GTT    ++K+G+++ AD+RA+ G  ++ ++  KI  I+P +    AG AAD     + +     LH L+  R   V  A+++L  +L+ Y+G  +    ++ G D TGP LY +   G   K      G GSL
Sbjct:   28 DFAKKGYKLPTARKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGY-IGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSL 175          
BLAST of CX294781 vs. ExPASy Swiss-Prot
Match: PSB10_HUMAN (Proteasome subunit beta type-10 OS=Homo sapiens GN=PSMB10 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  211 HAK--GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEG 576
            HA+  GTT    +F++GV++ AD+RA+    ++ +S +KI  I P +    AG AAD +   R +  K  LH L+  R   V   +++L   L+ Y+G  +    ++ G D TGP LY V   G
Sbjct:   34 HARKTGTTIAGLVFQDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADAEMTTRMVASKMELHALSTGREPRVATVTRILRQTLFRYQG-HVGASLIVGGVDLTGPQLYGVHPHG 156          
The following BLAST results are available for this feature:
BLAST of CX294781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
PSMB_METTH1.290e-1738.21Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSB8_PIG1.426e-1660.27Proteasome subunit beta type-8 (Fragment) OS=Sus s... [more]
PSMB_METTE2.433e-1631.50Proteasome subunit beta OS=Methanosarcina thermoph... [more]
PSMB_PYRHO4.748e-1236.36Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_METJA4.748e-1234.43Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_PYRAB8.099e-1235.54Proteasome subunit beta OS=Pyrococcus abyssi GN=ps... [more]
PSMB_PYRFU3.078e-1136.36Proteasome subunit beta OS=Pyrococcus furiosus GN=... [more]
PSB7_PIG4.019e-1130.20Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_BOVIN4.019e-1130.20Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB10_HUMAN4.019e-1133.87Proteasome subunit beta type-10 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC05055H03SK FlavSen1 Citrus clementina cDNA clone C05055H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294781 ID=CX294781; Name=CX294781; organism=Citrus clementina; type=EST; length=629bp
TTTCTGCTCGCAACTCTTAGCTACATTGTCGTTTAATCTTAAATTCAGTG
CGTAGACATGAAGCTCGACACTAGCGGTCTTGAGTCCACTTCTCCATTTT
TCGGGTCAGGCGACGAGCTCTGTCCTGAGTTATCAGCTGCACCATCATTT
GCTCTACCTCTTTCTACTGATTTTGATGAATTTCAAAAGGACACTAAAGC
TACACTGAAGCATGCCAAGGGGACAACCACACTTGCTTTTATCTTTAAAG
AGGGTGTTATGGTGGCTGCTGATTCTCGAGCTAGCATGGGAGGCTATATC
TCATCACAGTCTGTGAAGAAAATTATAGAAATCAATCCTTACATGCTTGG
CACAATGGCTGGAGGAGCAGCCGATTGCCAGTTTTGGCACAGAAATCTGG
GCATTAAGTGCCGACTACATGAATTGGCCAACAAGCGTAGAATTTCAGTT
ACAGGGGCATCAAAGCTGCTGGCCAACATTCTCTACTCTTATCGTGGAAT
GGGGTTGTCTGTTGGGACTATGATTGCTGGATGGGATGAGACTGGTCCTG
GGCTGTATTATGTGGACAGTGAAGGAGGGAGGCTCAAAGGACACGGTTCT
CTGTGGATCAGGTTCACATATGCTTATGG
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