CX294800

Overview
NameCX294800
Unique NameCX294800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294800_ssr477 microsatellite CX294800_ssr477:477..491. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX3_SOYBN (Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.296e-14
Identity = 40/84 (47.62%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLG+ +  + +W +D   L  F +F   L +IE  ++ RN D +L+ RCG    PY LLLPSS  G+T RGIPNSISI
Sbjct:  776 HASDEVYLGERD--NPNWTSDTRALEAFKRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSKEGLTFRGIPNSISI 857          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 42/84 (50.00%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLGQ +    +W +D   L  F +F   LEEIEK +  +NKD  L+ R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  771 HASDEFYLGQRDG-GDYWTSDAGPLEAFKRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSEEGLTFRGIPNSISI 853          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLG+ +  + +W +D   L  F KF   L EIEK +  RN D +L+ R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  780 HASDELYLGERD--NPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIPNSISI 861          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKG-RCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLGQ +  + HW +D + L  F KF   L+EIE+ +  RN D  L+G R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  757 HASDEVYLGQRD--NPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIPNSISI 839          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 41/84 (48.81%), Postives = 48/84 (57.14%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLGQ       W  D E L  FD+F   L +IEK I  RN D  L  R G    PY LL P+S  G+TG+GIPNS+SI
Sbjct:  780 HTTDEIYLGQRES--PEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 861          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX2_PEA (Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.645e-12
Identity = 41/84 (48.81%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLGQ  + + HW +D + L  F KF   L EIE  +  +N D  L  R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  783 HASDEVYLGQ--RENPHWTSDSKALQAFQKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSKEGLTFRGIPNSISI 864          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 7.697e-12
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS------SGPGVTGRGIPNSISI 277
            HS DE YLGQ +     W +DP+ L  F +FS  L EIE  +   NKD  LK R G    PY L+ P+      +  G+T RGIPNSISI
Sbjct:  776 HSADEIYLGQRDT--PEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 39/84 (46.43%), Postives = 48/84 (57.14%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLGQ       W  D E L  F++F   L +IEK I  RN +  L  R G    PY LL P+S  G+TG+GIPNS+SI
Sbjct:  779 HTTDEIYLGQRES--PEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 860          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX2_SOYBN (Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLGQ +  + HW +D + L  F KF   L+EIE+ +  +N D  L  R G    PY LL P+S  G+T RGIPNSISI
Sbjct:  785 HASDEVYLGQRD--NPHWTSDSKALQAFQKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPNS-EGLTCRGIPNSISI 865          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOXA_PHAVU (Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPS-SGPGVTGRGIPNSISI 277
            H+ DE YLGQ +  + +W N+ + L  F +F   L+EIE+ I  RNKD  L+ R G    PY +LLP+    G+T RGIPNSISI
Sbjct:  780 HASDEVYLGQRD--NPNWTNNIKALQAFKRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCEDEGLTFRGIPNSISI 862          
The following BLAST results are available for this feature:
BLAST of CX294800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LOX3_SOYBN6.296e-1447.62Seed lipoxygenase-3 OS=Glycine max GN=LOX1.3 PE=1 ... [more]
LOX4_SOYBN4.081e-1350.00Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOX3_PEA5.330e-1348.81Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_SOYBN9.092e-1350.59Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]
LOX1_SOLTU1.551e-1248.81Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX2_PEA2.645e-1248.81Seed lipoxygenase-2 OS=Pisum sativum GN=LOX1.2 PE=... [more]
LOX1_ORYSJ7.697e-1245.56Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOXA_SOLLC1.715e-1146.43Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX2_SOYBN1.715e-1147.62Seed lipoxygenase-2 OS=Glycine max GN=LOX1.2 PE=2 ... [more]
LOXA_PHAVU2.925e-1147.06Lipoxygenase 1 OS=Phaseolus vulgaris GN=LOXA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionC05056B01SK PhIFruit1 Citrus clementina cDNA clone C05056B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294800 ID=CX294800; Name=CX294800; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGCTCACTCTCCTGATGAAGAGTATCTAG
GTCAGGTGAACCAGTTACACAGCCACTGGATCAATGACCCTGAAGTTTTG
AATATGTTTGATAAGTTCTCTGCTAATCTGGAGGAGATTGAAAAGATAAT
AAATACAAGAAATAAAGATTTCCGTCTTAAAGGCAGATGTGGTGCTGGCA
TTCCACCATATGAACTGCTTCTTCCTTCCTCTGGTCCGGGAGTAACTGGT
CGAGGAATCCCCAATAGTATTTCTATCTGATGGACTTAGCTAAATTGAGA
CAGTGGTAGATGCCTTTTTGTCACTATCGCTTAGTGCATACCATTTTATT
TCTGTGTTGTGCGGTTGTATGGACCTTCAATAGATCTTTTGGGGTTCGGT
ATTTGATATTAAAGCTCTGTAATTTGTGGGTAAAAGATATGATAGGACAC
AGAAAACTTGGAATATCATGATATTGGATCTGATCTGATCTTTGTAAAGC
AACATATAATATGCTGCAACTTATATTGAACATATCGTTTTC
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