CX294800

Overview
NameCX294800
Unique NameCX294800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294800_ssr477 microsatellite CX294800_ssr477:477..491. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX5_ARATH (Lipoxygenase 5, chloroplastic OS=Arabidopsis thaliana GN=LOX5 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 41/89 (46.07%), Postives = 49/89 (55.06%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGP-----GVTGRGIPNSISI 277
            HS DE YLGQ +    +W  D E L  F +F   LE IE  I  RN D R K R G    PY LL P++       G+TG+GIPNS+SI
Sbjct:  800 HSTDEIYLGQRDS--PNWTADDEPLEAFKRFGKELELIENNIIRRNNDKRFKNRTGPVNIPYTLLYPNTTDYTREGGITGKGIPNSVSI 886          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOXB_SOLLC (Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 37/84 (44.05%), Postives = 47/84 (55.95%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE YLGQ + +   W  D E L  F++F   L +IE  I   N     K R G    PY LL P+S  G+TG+GIPNS+SI
Sbjct:  778 HASDEVYLGQRDSIE--WTKDKEPLVAFERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSEEGLTGKGIPNSVSI 859          
BLAST of CX294800 vs. ExPASy Swiss-Prot
Match: LOX1_LENCU (Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 38/84 (45.24%), Postives = 47/84 (55.95%), Query Frame = 2
Query:   26 HSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 277
            H+ DE+YLG+  +    W  D      F +F   L EIE+ +  RN D  L+ R G    PY LL PSS  G+T RGIPNSISI
Sbjct:  784 HASDEQYLGERIE-GDDWTTDSVPKEAFKRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSEEGLTCRGIPNSISI 866          
The following BLAST results are available for this feature:
BLAST of CX294800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
LOX5_ARATH4.989e-1146.07Lipoxygenase 5, chloroplastic OS=Arabidopsis thali... [more]
LOXB_SOLLC6.516e-1144.05Lipoxygenase B OS=Solanum lycopersicum GN=LOX1.2 P... [more]
LOX1_LENCU8.510e-1145.24Lipoxygenase OS=Lens culinaris GN=LOX1.1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05056B01SK PhIFruit1 Citrus clementina cDNA clone C05056B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294800 ID=CX294800; Name=CX294800; organism=Citrus clementina; type=EST; length=542bp
CTCGTGCCGAATTCGGCACGAGGCTCACTCTCCTGATGAAGAGTATCTAG
GTCAGGTGAACCAGTTACACAGCCACTGGATCAATGACCCTGAAGTTTTG
AATATGTTTGATAAGTTCTCTGCTAATCTGGAGGAGATTGAAAAGATAAT
AAATACAAGAAATAAAGATTTCCGTCTTAAAGGCAGATGTGGTGCTGGCA
TTCCACCATATGAACTGCTTCTTCCTTCCTCTGGTCCGGGAGTAACTGGT
CGAGGAATCCCCAATAGTATTTCTATCTGATGGACTTAGCTAAATTGAGA
CAGTGGTAGATGCCTTTTTGTCACTATCGCTTAGTGCATACCATTTTATT
TCTGTGTTGTGCGGTTGTATGGACCTTCAATAGATCTTTTGGGGTTCGGT
ATTTGATATTAAAGCTCTGTAATTTGTGGGTAAAAGATATGATAGGACAC
AGAAAACTTGGAATATCATGATATTGGATCTGATCTGATCTTTGTAAAGC
AACATATAATATGCTGCAACTTATATTGAACATATCGTTTTC
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