CX294813

Overview
NameCX294813
Unique NameCX294813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1194..1783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA3_ARATH (Cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Arabidopsis thaliana GN=CESA3 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 6.855e-31
Identity = 72/175 (41.14%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            L EA  V  CGYE  S WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + + SIP L Y  LPA C+ TN   +P++     +  L+LFL      +LE   +G+ I  WW N
Sbjct:  734 LKEAIHVISCGYEDKSDWGMEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKLPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYNGRLKFLERFAYVNTTIYPITSIPLLMYCTLPAVCLFTNQFIIPQISNIASIWFLSLFLSIFATGILEMRWSGVGIDEWWRN 908          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.527e-30
Identity = 71/175 (40.57%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            L EA  V  CGYE  S WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LFL      +LE   +G+ I  WW N
Sbjct:  742 LKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRN 916          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.527e-30
Identity = 71/175 (40.57%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            L EA  V  CGYE  S WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LFL      +LE   +G+ I  WW N
Sbjct:  742 LKEAIHVISCGYEDKSDWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFASIWFISLFLSIFATGILEMRWSGVGIDEWWRN 916          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.443e-30
Identity = 69/175 (39.43%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GWRS YC+P   AF G A  +    + Q  RWA G +EILFS+  PI     G+L+F +  AY+    + L SIP L Y  LPA C++T    +P++     +  ++LF+      +LE   +G+ I  WW N
Sbjct:  750 LKEAIHVISCGYEDKTEWGTEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYINTTIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFASIWFISLFISIFATGILEMRWSGVGIDEWWRN 924          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESAA_ARATH (Probable cellulose synthase A catalytic subunit 10 [UDP-forming] OS=Arabidopsis thaliana GN=CESA10 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.898e-30
Identity = 66/175 (37.71%), Postives = 98/175 (56.00%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GW S YC+P   AF G A  +    + Q  RWA G +EIL S+  PI     G+L+  + +AY+  + + + SIP L Y  LPA+C+ITN+  +P++     L  + LF       +LE   + +++  WW N
Sbjct:  736 LKEAIHVISCGYEAKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCVPSRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPITSIPLLAYCMLPAFCLITNTFIIPEISNLASLCFMLLFASIYASAILELKWSDVALEDWWRN 910          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.898e-30
Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            ++N S  + EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GW+S YC+P   AF G A  +    + Q  RWA G +EI FS+  P+     GKL+  + LAY+  + +   SIP L Y  +PA C++T    +P +     +  LALFL      +LE   +G+SI   W N
Sbjct:  710 ATNTSSLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFRMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYAWGGKLKILERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTINNFASIWFLALFLSIIATAILELRWSGVSINDLWRN 891          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA1_ARATH (Cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Arabidopsis thaliana GN=CESA1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.898e-30
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            ++N +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GW S YC P   AF G A  +    + Q  RWA G +EIL S+  PI     G+L+  + +AY+  + + + SIP + Y  LPA+C+IT+   +P++     +  + LF+   +  +LE   +G+SI  WW N
Sbjct:  742 TTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCNPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYHGRLRLLERIAYINTIVYPITSIPLIAYCILPAFCLITDRFIIPEISNYASIWFILLFISIAVTGILELRWSGVSIEDWWRN 923          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.205e-29
Identity = 67/183 (36.61%), Postives = 101/183 (55.19%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPI-LATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S+N S  + EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GWRS YC+PI  AF G A  +    + Q  RWA G +EI  S+  P+      G+L++ Q L+Y+  + +   S+P + Y  LPA C++T    +P +     +  L LF+   + ++LE   +G+ I  WW N
Sbjct:  650 SANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPIRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRN 832          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSI (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA4 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.205e-29
Identity = 67/183 (36.61%), Postives = 101/183 (55.19%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPI-LATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S+N S  + EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GWRS YC+PI  AF G A  +    + Q  RWA G +EI  S+  P+      G+L++ Q L+Y+  + +   S+P + Y  LPA C++T    +P +     +  L LF+   + ++LE   +G+ I  WW N
Sbjct:  650 SANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPIRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLSYINTIVYPFTSLPLIAYCCLPAICLLTGKFIIPTLSNAATIWFLGLFISIIVTSVLELRWSGIGIEDWWRN 832          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.205e-29
Identity = 67/182 (36.81%), Postives = 99/182 (54.40%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S+N +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GW S YC+P    F G A  +    + Q  RWA G +EIL S+  PI     G+L+  + LAY+  + + + SIP + Y  LPA C++TN   +P++     +  + LF       +LE   +G+ I  WW N
Sbjct:  737 STNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRN 918          
The following BLAST results are available for this feature:
BLAST of CX294813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA3_ARATH6.855e-3141.14Cellulose synthase A catalytic subunit 3 [UDP-form... [more]
CESA2_ORYSJ1.527e-3040.57Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI1.527e-3040.57Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA8_ORYSJ4.443e-3039.43Probable cellulose synthase A catalytic subunit 8 ... [more]
CESAA_ARATH9.898e-3037.71Probable cellulose synthase A catalytic subunit 10... [more]
CESA4_ARATH9.898e-3037.91Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA1_ARATH9.898e-3036.81Cellulose synthase A catalytic subunit 1 [UDP-form... [more]
CESA4_ORYSJ2.205e-2936.61Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA4_ORYSI2.205e-2936.61Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA1_ORYSJ2.205e-2936.81Probable cellulose synthase A catalytic subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05056C06SK PhIFruit1 Citrus clementina cDNA clone C05056C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294813 ID=CX294813; Name=CX294813; organism=Citrus clementina; type=EST; length=590bp
CTCGTGCCGAATTCGGCACGAGGAAGACAGGAGGTTATTCAAGTAACATA
TCGAGATCGCTTGATGAAGCACACCGAGTTGCAGATTGTGGTTATGAGTA
TGGTAGTAGCTGGGGTGATGAGGTGGGGTGCTTGTATGGCGCCACAGCAG
AAGATAACTTAACTGGCTTGGTGATCCATTCAAAAGGCTGGAGATCAGGC
TACTGCTTGCCGATCCCACATGCCTTTCTTGGCTGTGCGTCTCCCAGCGG
CCCTGCTGGGATGAGACAACAGAAAAGGTGGGCCACGGGACTGCTTGAAA
TCCTATTCAGCAAACGTAACCCCATATTGGCTACTCTCATCGGGAAGCTC
CAATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCG
CTCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCA
CCAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCT
CTTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCA
AGCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGT
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