CX294813

Overview
NameCX294813
Unique NameCX294813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1194..1783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.205e-29
Identity = 67/182 (36.81%), Postives = 99/182 (54.40%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S+N +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H++GW S YC+P    F G A  +    + Q  RWA G +EIL S+  PI     G+L+  + LAY+  + + + SIP + Y  LPA C++TN   +P++     +  + LF       +LE   +G+ I  WW N
Sbjct:  737 STNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPCFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLIAYCVLPAICLLTNKFIIPEISNYAGMFFILLFASIFATGILELRWSGVGIEDWWRN 918          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSJ (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.429e-28
Identity = 69/183 (37.70%), Postives = 100/183 (54.64%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPIL-ATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            SS+ +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GWRS YC+P   AF G A  +    + Q  RWA G +EI FS+ +P+L     G L++ +  +Y+    +   S+P L Y  LPA C++T    +P +     L  +ALF+      +LE   +G+SI  WW N
Sbjct:  715 SSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSVYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRN 897          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA9_ORYSI (Cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA9 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.429e-28
Identity = 69/183 (37.70%), Postives = 100/183 (54.64%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPIL-ATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            SS+ +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GWRS YC+P   AF G A  +    + Q  RWA G +EI FS+ +P+L     G L++ +  +Y+    +   S+P L Y  LPA C++T    +P +     L  +ALF+      +LE   +G+SI  WW N
Sbjct:  715 SSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSVYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKNGNLKWLERFSYINTTIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIALFISIFATGILEMRWSGVSIEEWWRN 897          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA7_ARATH (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Arabidopsis thaliana GN=CESA7 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.429e-28
Identity = 70/183 (38.25%), Postives = 101/183 (55.19%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPI-LATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            SS+ +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GWRS YC+P   AF G A  +    + Q  RWA G +EI FS+ +P+      GKL++ +  AY     +   SIP L Y  LPA C++T+   +P +     L  ++LF+   +  +LE   +G+SI  WW N
Sbjct:  688 SSSPAVLLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLWYGYKGGKLKWLERFAYANTTIYPFTSIPLLAYCILPAICLLTDKFIMPPISTFASLFFISLFMSIIVTGILELRWSGVSIEEWWRN 870          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA8_ARATH (Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.867e-28
Identity = 68/183 (37.16%), Postives = 100/183 (54.64%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPI-LATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S N S  + EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GWRS YC+P+  AF G A  +    + Q  RWA G +EI  S+  P+      G+L+  Q LAY+  + +   S+P + Y  LPA C++T    +P +     ++ L LF+   L ++LE   +G+SI   W N
Sbjct:  645 SVNPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSITEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGCSGGRLKLLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASMLFLGLFISIILTSVLELRWSGVSIEDLWRN 827          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 68/182 (37.36%), Postives = 99/182 (54.40%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S++ +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H  GWRS YC+P   AF G A  +    + Q  RWA G +EI FSK  P+     G L+F +  +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+   +  +LE   +G++I  WW N
Sbjct:  754 SASPASLLKEAIHVISCGYEDKTDWGKEIGWIYGSITEDILTGFKMHCHGWRSIYCIPKRPAFKGSAPLNLSDRLHQVLRWALGSVEIFFSKHCPLWYGYGGGLKFLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFVTGILEMRWSGVAIDDWWRN 935          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA7_ORYSJ (Cellulose synthase A catalytic subunit 7 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA7 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.184e-28
Identity = 65/184 (35.33%), Postives = 98/184 (53.26%), Query Frame = 3
Query:   33 GYSSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            G +++ +  + EA  V  CGYE  + WG E+G +YG+  ED LTG  +H +GW+S YC P   AF G A  +    + Q  RWA G +EI  S+  P+     G+L++ +  AY   + +   SIP L Y  +PA C++T    +P +     +  +ALFL      +LE   +G+SI  WW N
Sbjct:  722 GAAADPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCTPARAAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGRLKWLERFAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFIALFLSIIATGVLELRWSGVSIEDWWRN 905          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA6_ARATH (Cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Arabidopsis thaliana GN=CESA6 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.264e-28
Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 3
Query:   24 KTGGYSSNISRS--LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            + GG + N S +  L EA +V  CGYE  + WG E+G +YG+  ED LTG  +HS GWRS YC P   AF G A  +    + Q  RWA G +EI  S+  PI     G L++ + L+Y+  + +   S+P + Y +LPA C++T    +P++     ++ +ALF    +  +LE     + I  WW N
Sbjct:  740 ENGGMARNASPACLLKEAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKLAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERLSYINSVVYPWTSLPLIVYCSLPAICLLTGKFIVPEISNYASILFMALFSSIAITGILEMQWGKVGIDDWWRN 928          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 9.264e-28
Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = 3
Query:   24 KTGGYSSNISRS--LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            + GG + N S +  L EA +V  CGYE  + WG E+G +YG+  ED LTG  +HS GWRS YC P   AF G A  +    + Q  RWA G +EI  S+  PI     G L++ + L+Y+  + +   SIP L Y +LPA C++T    +P++     ++ +ALF    +  +LE     + I  WW N
Sbjct:  725 ENGGLARNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHSHGWRSVYCTPKIPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERLSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASILFMALFGSIAVTGILEMQWGKVGIDDWWRN 913          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27
Identity = 65/187 (34.76%), Postives = 101/187 (54.01%), Query Frame = 3
Query:   30 GGYSSNISRS--LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            GG  SN++ +  L E+ +V  CGYE  + WG E+G +YG+  ED LTG  +H  GWRS YC+P   AF G A  +    + Q  RWA G +EI  S+  PI     G L++ +  +Y+  + +   S+P L Y +LPA C++T    +P++     ++ L +F+   +  +LE     + I  WW N
Sbjct:  745 GGVPSNVNPASLLRESIQVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSLPLLVYCSLPAICLLTGKFIVPEISNYAGILFLLMFMSIAVTGILEMQWGKIGIDDWWRN 931          
The following BLAST results are available for this feature:
BLAST of CX294813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA1_ORYSI2.205e-2936.81Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA9_ORYSJ1.429e-2837.70Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA9_ORYSI1.429e-2837.70Cellulose synthase A catalytic subunit 9 [UDP-form... [more]
CESA7_ARATH1.429e-2838.25Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA8_ARATH1.867e-2837.16Cellulose synthase A catalytic subunit 8 [UDP-form... [more]
CESA6_ORYSJ2.438e-2837.36Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA7_ORYSJ3.184e-2835.33Cellulose synthase A catalytic subunit 7 [UDP-form... [more]
CESA6_ARATH9.264e-2835.98Cellulose synthase A catalytic subunit 6 [UDP-form... [more]
CESA5_ARATH9.264e-2837.04Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA9_ARATH3.520e-2734.76Probable cellulose synthase A catalytic subunit 9 ... [more]

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Properties
Property NameValue
Genbank descriptionC05056C06SK PhIFruit1 Citrus clementina cDNA clone C05056C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294813 ID=CX294813; Name=CX294813; organism=Citrus clementina; type=EST; length=590bp
CTCGTGCCGAATTCGGCACGAGGAAGACAGGAGGTTATTCAAGTAACATA
TCGAGATCGCTTGATGAAGCACACCGAGTTGCAGATTGTGGTTATGAGTA
TGGTAGTAGCTGGGGTGATGAGGTGGGGTGCTTGTATGGCGCCACAGCAG
AAGATAACTTAACTGGCTTGGTGATCCATTCAAAAGGCTGGAGATCAGGC
TACTGCTTGCCGATCCCACATGCCTTTCTTGGCTGTGCGTCTCCCAGCGG
CCCTGCTGGGATGAGACAACAGAAAAGGTGGGCCACGGGACTGCTTGAAA
TCCTATTCAGCAAACGTAACCCCATATTGGCTACTCTCATCGGGAAGCTC
CAATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCG
CTCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCA
CCAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCT
CTTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCA
AGCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGT
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