CX294813

Overview
NameCX294813
Unique NameCX294813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1194..1783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA2_ARATH (Cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Arabidopsis thaliana GN=CESA2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.520e-27
Identity = 65/189 (34.39%), Postives = 101/189 (53.44%), Query Frame = 3
Query:   24 KTGGYSSNISRS--LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            + GG   N S +  L EA +V  CGYE  + WG E+G +YG+  ED LTG  +H  GWRS YC+P   AF G A  +    + Q  RWA G +EI  S+  PI     G L++ +  +Y+  + +   S+P + Y +LPA C++T    +P++     ++ + +F+   +  +LE    G+ I  WW N
Sbjct:  739 QNGGVPRNASPACLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSLPLIVYCSLPAVCLLTGKFIVPEISNYAGILFMLMFISIAVTGILEMQWGGVGIDDWWRN 927          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA3_ORYSJ (Probable cellulose synthase A catalytic subunit 3 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.024e-26
Identity = 66/182 (36.26%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S++ +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H  GWRS YC+P   AF G A  +    + Q  RWA G +EI FS   P+     G L+  +  +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+      +LE   +G+ I  WW N
Sbjct:  755 SASPASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKLPAFKGSAPLNLSDRLHQVLRWALGSVEIFFSNHCPLWYGYGGGLKCLERFSYINSIVYPFTSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFATGILEMRWSGVGIDDWWRN 936          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSJ (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.338e-26
Identity = 66/182 (36.26%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S++ +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H  GWRS YC+P   AF G A  +    + Q  RWA G +EI FS   P+     G L+  +  +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+      +LE   +G+ I  WW N
Sbjct:  754 SASPASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIEIFFSNHCPLWYGYGGGLKCLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRN 935          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CESA5_ORYSI (Probable cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA5 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.338e-26
Identity = 66/182 (36.26%), Postives = 95/182 (52.20%), Query Frame = 3
Query:   39 SSNISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            S++ +  L EA  V  CGYE  + WG E+G +YG+  ED LTG  +H  GWRS YC+P   AF G A  +    + Q  RWA G +EI FS   P+     G L+  +  +Y+  + +   SIP L Y  LPA C++T     P++     L  ++LF+      +LE   +G+ I  WW N
Sbjct:  754 SASPASLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHCHGWRSIYCIPKRAAFKGSAPLNLSDRLHQVLRWALGSIEIFFSNHCPLWYGYGGGLKCLERFSYINSIVYPWTSIPLLAYCTLPAICLLTGKFITPELTNIASLWFMSLFICIFATGILEMRWSGVGIDDWWRN 935          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.295e-25
Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = 3
Query:   45 NISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWW 578
            NI    ++A  +A C YE  + WG+E+G  YG   ED +TGL IH +GW S Y  P   AF+G A  +    + Q KRW+ G   I  SK N  L    GK+  +  + Y     W   S+P + Y+ +PA  ++  +   P++  P     + +F +  LY+L E + +G +++ WW
Sbjct:  410 NIDEIEEKAKSLATCTYELRTQWGNEIGVKYGCPVEDVITGLAIHCRGWESVYMEPQRAAFVGVAPATLAQTILQHKRWSEGNFTIFLSKHNTFLFG-HGKISLQLQMGYCIYGLWAANSLPTIYYVMIPALGLVKGTPLFPEIMSPWATPFIYVFCVKTLYSLYEALLSGDTLKGWW 586          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD1_ARATH (Cellulose synthase-like protein D1 OS=Arabidopsis thaliana GN=CSLD1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.621e-25
Identity = 63/173 (36.42%), Postives = 93/173 (53.76%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WGD +G +YG+  ED +TG  +H++GWRS YC+    AF G A  +    + Q  RWATG +EI FSK N + AT   +L+F Q +AYL +  +   SI  + Y  LPA C+ +    +  +    +   L + +   L +LLE   +G+ +  WW N
Sbjct:  712 EAIAVISCWYEDNTEWGDRIGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAMFAT--RRLKFLQRVAYLNVGIYPFTSIFLVVYCFLPALCLFSGKFIVQSLDIHFLSYLLCITVTLTLISLLEVKWSGIGLEEWWRN 882          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.136e-24
Identity = 57/178 (32.02%), Postives = 93/178 (52.25%), Query Frame = 3
Query:   45 NISRSLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWW 578
            NI+   ++A  +  C YE+ + WG+++G  YG  AED +TGL IH +GW S +  P   AFLG A  +    + Q KRW+ G L I  SK    L    GK++ +  + Y     W   S+P L Y+ +P+  ++  +   P++  P     + +F +  LY L E + +G +++ WW
Sbjct:  415 NINEIEEKATSLVTCTYEHRTQWGNDIGVKYGFPAEDIITGLAIHCRGWESAFINPKRAAFLGLAPSTLAQNILQHKRWSEGNLTIFLSKYCSFLFG-HGKIKLQLQMGYCICGLWAANSLPTLYYVVIPSLGLVKGTPLFPQIMSPWATPFIYVFCVKTLYGLYEALLSGDTLKGWW 591          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.789e-24
Identity = 61/170 (35.88%), Postives = 85/170 (50.00%), Query Frame = 3
Query:   69 AHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWW 578
            AH VA C YE  ++WG ++G  YG+  ED  TG ++H +GWRS +C P   AF G +       + QQ RW+ GLLE+ FS+ NP L   I  L     L Y     W    IP + Y  LP   +I   +  PK  +P   + + LFL      L +++  G + R WW
Sbjct:  409 AHDVAGCNYECNTNWGSKIGFRYGSLVEDYFTGFMLHCEGWRSIFCSPTKAAFYGDSPKCLTDVIGQQIRWSVGLLEVAFSRYNP-LTYGIKPLSLLMSLGYCHYAFWPFWCIPLVVYGILPQVALIHGVSVFPKASDPWFWLYIILFLGGYAQDLSDFLLEGGTYRKWW 577          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSJ (Cellulose synthase-like protein D5 OS=Oryza sativa subsp. japonica GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.643e-24
Identity = 66/174 (37.93%), Postives = 94/174 (54.02%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLI-YKLYTLLEYIQAGLSIRSWWVN 584
            E+  V  C YE  + WG  VG +YG+  ED +TG  +H++GWRS YC+    AF G A  +    + Q  RWATG +EI FSK N +LA+   +L+F Q +AYL +  +   S+  + Y  LPA  + +   F+    +PT L  L L  I   L  LLE   +G+ +  WW N
Sbjct:  688 ESVSVISCWYEDNTEWGQRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAVLAS--RRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQ-FIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRN 858          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.643e-24
Identity = 66/174 (37.93%), Postives = 94/174 (54.02%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLI-YKLYTLLEYIQAGLSIRSWWVN 584
            E+  V  C YE  + WG  VG +YG+  ED +TG  +H++GWRS YC+    AF G A  +    + Q  RWATG +EI FSK N +LA+   +L+F Q +AYL +  +   S+  + Y  LPA  + +   F+    +PT L  L L  I   L  LLE   +G+ +  WW N
Sbjct:  688 ESVSVISCWYEDNTEWGQRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAVLAS--RRLKFLQRMAYLNVGIYPFTSLFLIMYCLLPALSLFSGQ-FIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRN 858          
The following BLAST results are available for this feature:
BLAST of CX294813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CESA2_ARATH3.520e-2734.39Cellulose synthase A catalytic subunit 2 [UDP-form... [more]
CESA3_ORYSJ1.024e-2636.26Probable cellulose synthase A catalytic subunit 3 ... [more]
CESA5_ORYSJ1.338e-2636.26Probable cellulose synthase A catalytic subunit 5 ... [more]
CESA5_ORYSI1.338e-2636.26Probable cellulose synthase A catalytic subunit 5 ... [more]
CSLE6_ORYSJ3.295e-2532.58Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLD1_ARATH5.621e-2536.42Cellulose synthase-like protein D1 OS=Arabidopsis ... [more]
CSLE1_ORYSJ2.136e-2432.02Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLG2_ARATH2.789e-2435.88Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLD5_ORYSJ3.643e-2437.93Cellulose synthase-like protein D5 OS=Oryza sativa... [more]
CSLD5_ORYSI3.643e-2437.93Putative cellulose synthase-like protein D5 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC05056C06SK PhIFruit1 Citrus clementina cDNA clone C05056C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294813 ID=CX294813; Name=CX294813; organism=Citrus clementina; type=EST; length=590bp
CTCGTGCCGAATTCGGCACGAGGAAGACAGGAGGTTATTCAAGTAACATA
TCGAGATCGCTTGATGAAGCACACCGAGTTGCAGATTGTGGTTATGAGTA
TGGTAGTAGCTGGGGTGATGAGGTGGGGTGCTTGTATGGCGCCACAGCAG
AAGATAACTTAACTGGCTTGGTGATCCATTCAAAAGGCTGGAGATCAGGC
TACTGCTTGCCGATCCCACATGCCTTTCTTGGCTGTGCGTCTCCCAGCGG
CCCTGCTGGGATGAGACAACAGAAAAGGTGGGCCACGGGACTGCTTGAAA
TCCTATTCAGCAAACGTAACCCCATATTGGCTACTCTCATCGGGAAGCTC
CAATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCG
CTCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCA
CCAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCT
CTTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCA
AGCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGT
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