CX294813

Overview
NameCX294813
Unique NameCX294813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14254 contig Ccv1_Contig14254:1194..1783. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 8.116e-24
Identity = 60/170 (35.29%), Postives = 88/170 (51.76%), Query Frame = 3
Query:   69 AHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWW 578
            AHRVA C YE  ++WG ++G  YG+  ED  TG  +H +GWRS +C P   AF G +  S    + QQKRWA GLLE+  S+ +PI    +  +     + Y     W   S+P + Y  LP   ++  S+  PK  +P   + + LFL      LL+++  G +   WW
Sbjct:  438 AHRVAGCIYELNTNWGSKIGFRYGSLVEDYYTGYRLHCEGWRSVFCRPKRAAFCGDSPKSLIDVVSQQKRWAIGLLEVAISRYSPITYG-VKSMGLVTGVGYCQYACWAFWSLPLIVYGFLPQLALLYQSSVFPKSSDPWFWLYIVLFLGAYGQDLLDFVLEGGTYGGWW 606          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.973e-23
Identity = 62/174 (35.63%), Postives = 96/174 (55.17%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKL-YTLLEYIQAGLSIRSWWVN 584
            E+  V  C YE  + WGD VG +YG+  ED +TG  +H++GWRS YC+    +F G A  +    + Q  RWATG +EI FS+ N ILA+   +L+F Q LAYL +  +   S+  + Y  LPA+ + +   F+ +    + L+ L +  I  +   +LE   +G+ +  WW N
Sbjct:  780 ESVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDSFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAILAS--KRLKFLQRLAYLNVGIYPFTSLFLILYCFLPAFSLFSGQ-FIVRTLSISFLVYLLMITICLIGLAVLEVKWSGIGLEEWWRN 950          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.973e-23
Identity = 61/173 (35.26%), Postives = 90/173 (52.02%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WGD VG +YG+  ED +TG  +H++GWRS YC+    AFLG A  +    + Q  RWATG +EI FS+ N  LA+   KL   Q ++YL +  +   SI  L Y  +PA  + +    + K+    +   L + +      +LE   +G+ +  WW N
Sbjct:  818 EAVSVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCITKRDAFLGTAPINLTDRLHQVLRWATGSVEIFFSRNNAFLAS--RKLMLLQRISYLNVGIYPFTSIFLLVYCFIPALSLFSGFFIVQKLDIAFLCYLLTMTITLVALGILEVKWSGIELEDWWRN 988          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSJ (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. japonica GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.172e-22
Identity = 60/173 (34.68%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  VG +YG+  ED +TG  +H++GW+S YC+    AF G A  +    + Q  RWATG +EI FS+ N +LA+   K++F Q +AYL +  +   SI  + Y  LPA  + +    +  +    +   L + L   +  +LE   +G+S+  WW N
Sbjct:  844 EAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLAS--RKMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRN 1014          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD2_ORYSI (Cellulose synthase-like protein D2 OS=Oryza sativa subsp. indica GN=CSLD2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.172e-22
Identity = 60/173 (34.68%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  VG +YG+  ED +TG  +H++GW+S YC+    AF G A  +    + Q  RWATG +EI FS+ N +LA+   K++F Q +AYL +  +   SI  + Y  LPA  + +    +  +    +   L + L   +  +LE   +G+S+  WW N
Sbjct:  844 EAISVISCWYEDKTEWGQRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLAS--RKMKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVRTLNVTFLTYLLVITLTMCMLAVLEIKWSGISLEEWWRN 1014          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD2_ARATH (Cellulose synthase-like protein D2 OS=Arabidopsis thaliana GN=CSLD2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.172e-22
Identity = 59/173 (34.10%), Postives = 92/173 (53.18%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  +G +YG+  ED +TG  +H++GW+S YC+    AF G A  +    + Q  RWATG +EI FS+ N +LA+   K++  Q +AYL +  +   SI  + Y  LPA  + +    +  +    ++  L + +   L  LLE   +G+S+  WW N
Sbjct:  819 EAIAVISCWYEDKTEWGSRIGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLAS--SKMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLVYLLIISITLCLLALLEIKWSGISLEEWWRN 989          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 59/173 (34.10%), Postives = 93/173 (53.76%), Query Frame = 3
Query:   66 EAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            EA  V  C YE  + WG  VG +YG+  ED +TG  +H++GWRS YC+    AF G A  +    + Q  RWATG +EI FS+ N I AT   +++F Q +AY  +  +   S+  + Y  LPA  + +    +  +    ++  L++ L   + +LLE   +G+++  WW N
Sbjct:  855 EAISVISCFYEDKTEWGKRVGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNAIFAT--RRMKFLQRVAYFNVGMYPFTSLFLIVYCILPAISLFSGQFIVQSLDITFLIYLLSITLTLCMLSLLEIKWSGITLHEWWRN 1025          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 58/168 (34.52%), Postives = 82/168 (48.81%), Query Frame = 3
Query:   78 VADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLI-YKLYTLLEYIQAGLSIRSWW 578
            +A C YE  + WG E+G  YG   ED +TGL I  +GW+S Y  P   AFLG A  +    + QQ+RW+ G  +I+ SK +P+     GK+     L Y     W   S+P L Y  L + C+       PKV   +  IP     +    Y+L E++  G + R WW
Sbjct:  418 LASCTYEENTQWGKEMGVKYGCPVEDVITGLTIQCRGWKSAYLNPEKQAFLGVAPTNLHQMLVQQRRWSEGDFQIMLSKYSPVWYGK-GKISLGLILGYCCYCLWAPSSLPVLIYSVLTSLCLFKGIPLFPKVSS-SWFIPFGYVTVAATAYSLAEFLWCGGTFRGWW 583          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 63/176 (35.80%), Postives = 91/176 (51.70%), Query Frame = 3
Query:   57 SLDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVN 584
            +++EA  V  C YE  + WG  VG +YG+  ED +TG  +H KGWRS YC+  P AF G A  +    + Q  RWATG +EI FS+ N I A    KL+  Q +AYL +  +   SI  L Y  LP   + +    +  +    ++  L + L      +LE   +G+S+  WW N
Sbjct:  651 TVNEAVNVISCWYEDKTEWGFNVGWIYGSVTEDVVTGFRMHEKGWRSFYCVTEPDAFRGSAPINLTDRLHQVLRWATGSVEIFFSRNNAIFAG--PKLKLLQRIAYLNVGIYPFTSIFILTYCFLPPLSLFSGHFVVETLTGSFLIYLLIITLSLCGLAVLEVKWSGISLEEWWRN 824          
BLAST of CX294813 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.453e-22
Identity = 62/173 (35.84%), Postives = 85/173 (49.13%), Query Frame = 3
Query:   60 LDEAHRVADCGYEYGSSWGDEVGCLYGATAEDNLTGLVIHSKGWRSGYCLPIPHAFLGCASPSGPAGMRQQKRWATGLLEILFSKRNPILATLIGKLQFRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWW 578
            L  AH VA C YEY ++WG ++G  YG+  ED  TG ++H +GWRS +C P   AF G +       + QQ RWA GL E+ FSK +PI    I  L     L Y         SIP   Y  LP   +I+  +  PK  +P   + + LF       L +++  G + R WW
Sbjct:  416 LSLAHNVAGCIYEYNTNWGSKIGFRYGSLVEDYYTGFMLHCEGWRSVFCNPKKAAFYGDSPKCLVDLVGQQIRWAVGLFEMSFSKYSPITYG-IKSLDLLMGLGYCNSPFKPFWSIPLTVYGLLPQLALISGVSVFPKASDPWFWLYIILFFGAYAQDLSDFLLEGGTYRKWW 587          
The following BLAST results are available for this feature:
BLAST of CX294813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLG3_ARATH8.116e-2435.29Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLD4_ARATH8.973e-2335.63Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLD3_ORYSJ8.973e-2335.26Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD2_ORYSJ1.172e-2234.68Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ORYSI1.172e-2234.68Cellulose synthase-like protein D2 OS=Oryza sativa... [more]
CSLD2_ARATH1.172e-2234.10Cellulose synthase-like protein D2 OS=Arabidopsis ... [more]
CSLD5_ARATH1.531e-2234.10Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLE1_ARATH2.611e-2234.52Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLD6_ARATH2.611e-2235.80Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLG1_ARATH4.453e-2235.84Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05056C06SK PhIFruit1 Citrus clementina cDNA clone C05056C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294813 ID=CX294813; Name=CX294813; organism=Citrus clementina; type=EST; length=590bp
CTCGTGCCGAATTCGGCACGAGGAAGACAGGAGGTTATTCAAGTAACATA
TCGAGATCGCTTGATGAAGCACACCGAGTTGCAGATTGTGGTTATGAGTA
TGGTAGTAGCTGGGGTGATGAGGTGGGGTGCTTGTATGGCGCCACAGCAG
AAGATAACTTAACTGGCTTGGTGATCCATTCAAAAGGCTGGAGATCAGGC
TACTGCTTGCCGATCCCACATGCCTTTCTTGGCTGTGCGTCTCCCAGCGG
CCCTGCTGGGATGAGACAACAGAAAAGGTGGGCCACGGGACTGCTTGAAA
TCCTATTCAGCAAACGTAACCCCATATTGGCTACTCTCATCGGGAAGCTC
CAATTTCGACAATGTTTGGCTTATTTGTGGATCCTTACTTGGGGCTTGCG
CTCAATTCCCGAGCTGTGCTACATTGCCCTTCCAGCTTATTGCATCATCA
CCAACTCCACTTTCCTGCCAAAGGTCCAGGAACCAACCGTATTGATCCCT
CTTGCACTTTTTTTGATCTACAAATTATATACTCTATTAGAGTACATTCA
AGCTGGTTTATCAATCCGTTCATGGTGGGTTAACAATTGT
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