CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.088e-11
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  233 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +++  K+K+ INGFGRIGR   R    R D  +E+VA+ND        +++ KYDS  G ++  +VK   ++ +    K + V   RNP  +PWG+
Sbjct:    1 MSSTGKIKIGINGFGRIGRLVARVALLRDD--IELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGE 94          

HSP 2 Score: 31.9574 bits (71), Expect = 6.088e-11
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P + P G  G++ V+E TGVF D+E
Sbjct:   87 PEEIPWGETGVEYVVESTGVFTDKE 111          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 2
Query:  251 LKVAINGFGRIGR-NFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            +K+ INGFGRIGR  F R    G +   +EVVAIND       +HLLKYDST G F+ +V     D + VDGK  +V +     N+PW
Sbjct:    3 VKIGINGFGRIGRLAFRRIMDLGEETKDIEVVAINDLTTPAMLAHLLKYDSTHGTFDHEVSAT-EDSLVVDGKKYRVYAEPQAQNIPW 89          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKGQECL-*TERAAAH 577
            +KV INGFGRIGR   R  +  + + +E+VA+ND       A+++LKYDST G F+ D+K V  + ++V+GK ++    ++P N+PW +  +   ++       TE+A AH
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIK-VDGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAH 110          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_ESCF3 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=epd PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.902e-11
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            ++VAINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+    D + V    I+V+  R+  +LPW
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQ-ERDQLCVGDDAIRVLHERSLQSLPW 88          

HSP 2 Score: 25.7942 bits (55), Expect = 7.902e-11
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  502 PLGGLGIDLVIEGTGVFVDREGG 570
            P   LG+D+V++ TGV+  RE G
Sbjct:   87 PWRELGVDVVLDCTGVYGSREHG 109          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
G3PC_GINBI6.088e-1135.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_LACDE7.787e-1145.45Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]
G3P_CURLU7.787e-1136.94Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
E4PD_ESCF37.902e-1140.23D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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