CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 77.0258 bits (188), Expect = 3.218e-18
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  245 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            AKLKV INGFGRIGR  LR   G  +  +E V IND       ++LLKYDST G   + V+    DGI +DG  I  VS RNP  LPWG
Sbjct:    2 AKLKVGINGFGRIGRLVLRA--GINNPNIEFVGINDLVPPDNLAYLLKYDSTHGKLRSQVE-AKDDGIVIDGHFIPCVSVRNPAELPWG 87          

HSP 2 Score: 35.039 bits (79), Expect = 3.218e-18
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P + P G LG D V+E TG+F D EG S
Sbjct:   81 PAELPWGKLGADYVVESTGLFTDSEGAS 108          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.218e-18
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  245 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            AKLKV INGFGRIGR  LR   G  +  +E V IND       ++LLKYDST G   + V+    DGI +DG  I  VS RNP  LPWG
Sbjct:    2 AKLKVGINGFGRIGRLVLRA--GINNPNIEFVGINDLVPPDNLAYLLKYDSTHGRLRSQVE-TKDDGIVIDGHFIPCVSVRNPAELPWG 87          

HSP 2 Score: 35.039 bits (79), Expect = 3.218e-18
Identity = 15/28 (53.57%), Postives = 18/28 (64.29%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P + P G LG D V+E TG+F D EG S
Sbjct:   81 PAELPWGKLGADYVVESTGLFTDSEGAS 108          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.629e-17
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGRN  R     K+  +EVVA+ND T      +HLLKYDS  G  +A+V  V  DG+SV+GK I V + RNP NL WG+
Sbjct:    3 VKVGINGFGRIGRNVFRA--AVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGRLDAEV--VVNDGVSVNGKEIIVKAERNPENLAWGE 87          

HSP 2 Score: 27.7202 bits (60), Expect = 2.629e-17
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P     G +G+D+V+E TG F  RE
Sbjct:   80 PENLAWGEIGVDIVVESTGRFTKRE 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.629e-17
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +++ INGFGRIGRN  R    R  S LE+VA+ND G V   +HLL YDS LG F  +V       I V  + I+V++ R+P  LPWGD
Sbjct:    3 VRIGINGFGRIGRNVFRAAAARS-SELEIVAVNDLGDVPTMAHLLAYDSILGRFPEEV-TAEPGAIRVGDRTIKVLAERDPGALPWGD 88          

HSP 2 Score: 32.3426 bits (72), Expect = 2.629e-17
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVD 558
            P   P G LG+D+VIE TG+F D
Sbjct:   81 PGALPWGDLGVDIVIESTGIFTD 103          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 5.777e-17
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPW 508
            +K+AINGFGRIGRN  +    R    +++VAIND    K  +HLLKYDST G++   V+    DG I VDG+ I++++ R+P NLPW
Sbjct:    1 MKLAINGFGRIGRNVFKIAFERG---IDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVE--SRDGAIVVDGREIKIIAERDPKNLPW 82          

HSP 2 Score: 29.6462 bits (65), Expect = 5.777e-17
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P+  P   LGID+VIE TGVF
Sbjct:   77 PKNLPWAKLGIDVVIESTGVF 97          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.145e-16
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +K+ INGFGRIGR  LR   GRKD  +EVVA+ND       A+++ KYDST G ++ +V   G D + +DG  I+V   R+P N+PWG
Sbjct:    3 IKIGINGFGRIGRLVLRVALGRKD--IEVVAVNDPFIAPDYAAYMFKYDSTHGRYKGEVTASG-DDLVIDGHKIKVFQERDPANIPWG 87          

HSP 2 Score: 30.0314 bits (66), Expect = 2.145e-16
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREG 567
            P   P G  G+D VIE TGVF   EG
Sbjct:   81 PANIPWGKSGVDYVIESTGVFTKVEG 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.034e-15
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +KVAINGFGRIGR  LR    RK   LEVVA+ND    V  A+++ KYDST G ++ +V   G D + +DG  I V   ++P NLPWG
Sbjct:    2 VKVAINGFGRIGRLVLRIALQRK--ALEVVAVNDPFISVDYAAYMFKYDSTHGRYKGEVTTSGND-LVIDGHKIAVFQEKDPANLPWG 86          

HSP 2 Score: 29.6462 bits (65), Expect = 1.034e-15
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P   P G LG+D+VI+ TGVF
Sbjct:   80 PANLPWGKLGVDIVIDSTGVF 100          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.343e-15
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +KV INGFGRIGR  LR  +  K+  +EVVA+ND     + A+++ KYDST G F+  V+     G+ +DGK IQV   R+P N+PWG
Sbjct:    3 IKVGINGFGRIGRIVLR--NALKNPEVEVVAVNDPFIDTEYAAYMFKYDSTHGRFKGKVE-AKDGGLIIDGKHIQVFGERDPSNIPWG 87          

HSP 2 Score: 29.6462 bits (65), Expect = 1.343e-15
Identity = 13/28 (46.43%), Postives = 15/28 (53.57%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P   P G  G D V+E TGVF  +E  S
Sbjct:   81 PSNIPWGKAGADYVVESTGVFTGKEAAS 108          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 75.485 bits (184), Expect = 1.344e-15
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGRN  R     K+  +EVVA+ND       +HLLKYDS  G  +A+V  V  + + V+GK I V + R+P NL WG+
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVS-VNGNNLVVNGKEIIVKAERDPENLAWGE 87          

HSP 2 Score: 27.7202 bits (60), Expect = 1.344e-15
Identity = 11/25 (44.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P     G +G+D+V+E TG F  RE
Sbjct:   80 PENLAWGEIGVDIVVESTGRFTKRE 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.830e-15
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            +K+AINGFGRIGRN +R  +     + +++VAIN+    +  +HLLKYD++ G F   VK +G D ISV G  I +    NP  LPW
Sbjct:    3 IKLAINGFGRIGRNIVRALYESGLSNEIKIVAINELADPEAIAHLLKYDTSHGRFFFPVK-LGEDTISVAGDAIALFCEPNPAELPW 88          

HSP 2 Score: 30.4166 bits (67), Expect = 3.830e-15
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDRE 564
            P P + P   LG+D+V+E TGV+  RE
Sbjct:   81 PNPAELPWKTLGVDVVLECTGVYHSRE 107          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
G3P1_ANAVT3.218e-1851.69Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP3.218e-1851.69Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_BACCO2.629e-1752.81Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_STRAE2.629e-1747.73Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BORBU5.777e-1748.28Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P_CANAL2.145e-1647.73Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P1_KLULA1.034e-1550.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_YARLI1.343e-1547.73Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_BACST1.344e-1547.73Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
E4PD_PSEHT3.830e-1544.83D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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