CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.472e-15
Identity = 43/85 (50.59%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLP 505
            +KVAINGFGRIGRN LR       + +EVVAIND G V+  +HL ++DS  G F  +VK  G D I V    I+V + RNP  LP
Sbjct:    3 VKVAINGFGRIGRNVLRAIIESGRTDIEVVAINDLGPVETNAHLFRFDSVHGRFPGEVKVAG-DTIDVGRGPIKVTAVRNPAELP 86          

HSP 2 Score: 26.9498 bits (58), Expect = 6.472e-15
Identity = 10/25 (40.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P + P   LG+D+ +E TG+F  R+
Sbjct:   82 PAELPHKELGVDIALECTGIFTSRD 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.408e-15
Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLP 505
            +KVAINGFGRIGR   R    R DS LE+V IND G V+  + L K DS  G +   V   G D + +DGK I V + R+P NLP
Sbjct:    3 VKVAINGFGRIGRLAARAILSRPDSGLELVTINDLGSVEGNAFLFKRDSAHGTYPGTVTTEGNDMV-IDGKKIVVTAERDPANLP 86          

HSP 2 Score: 27.335 bits (59), Expect = 8.408e-15
Identity = 12/28 (42.86%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P   P   LG+D+V+E TG+F + E  S
Sbjct:   82 PANLPHKKLGVDIVMECTGIFTNTEKAS 109          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 8.888e-15
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  254 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDW 517
            K+ INGFGRIGRN  R      +S +EVVAIND    K  +HLLKYD+  G   A+V     + I V+GK I+V++ R+P  LPW D+
Sbjct:    3 KIGINGFGRIGRNVFRA--ALNNSEVEVVAINDLTDAKTLAHLLKYDTVHGTLNAEVS-ANENSIVVNGKEIKVIAERDPAQLPWSDY 87          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.092e-14
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST G F+ D++   ++ ++V+ K I     R+P N+PWG
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHDDVEIVAVNDPFIETKYAAYMLKYDSTHGQFKGDIQHSSSNNLTVNNKTIHFYQERDPANIPWG 88          

HSP 2 Score: 27.7202 bits (60), Expect = 1.092e-14
Identity = 12/25 (48.00%), Postives = 14/25 (56.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P   P G  G+D V+E TGVF   E
Sbjct:   82 PANIPWGKHGVDYVVESTGVFTTTE 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.093e-14
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            + V INGFGRIGR  LR    RKD  +++VAIND     + AS++ KYDST G +  +V   G + I +DGK I+V   R+PVN+PWG
Sbjct:    3 ITVGINGFGRIGRLVLRIALSRKD--IQIVAINDPFIAPEYASYMFKYDSTHGRYSGEVSHEG-ENIVIDGKKIRVYQERDPVNIPWG 87          

HSP 2 Score: 24.6386 bits (52), Expect = 1.093e-14
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P   P G  G+D VI+ TGVF
Sbjct:   81 PVNIPWGKDGVDYVIDSTGVF 101          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.420e-14
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            + V INGFGRIGR  LR    R D  ++VVAIND     + A+++ KYDST   ++ +V   G   I++DGK I V   R+PVN+PWG
Sbjct:    3 ITVGINGFGRIGRLVLRVALSRAD--IKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSASGNK-INIDGKEITVFQERDPVNIPWG 87          

HSP 2 Score: 30.0314 bits (66), Expect = 1.420e-14
Identity = 14/26 (53.85%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREG 567
            P   P G  G+D VIE TGVF   EG
Sbjct:   81 PVNIPWGKAGVDYVIESTGVFTTLEG 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.396e-14
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +K+ INGFGRIGR   R    R D  +EVV IND   V+  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL WG
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDD--IEVVGINDLIDVEYMAYMLKYDSTHGRFDGTVE-VKDGNLVVNGKTIRVTAERDPANLNWG 86          

HSP 2 Score: 25.409 bits (54), Expect = 2.396e-14
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  508 GGLGIDLVIEGTGVFVDRE 564
            G +G+D+ +E TG+F+  E
Sbjct:   86 GAIGVDIAVEATGLFLTDE 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_PSEAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudomonas aeruginosa GN=gap PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.397e-14
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWH-GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            +++AINGFGRIGRN LR  + G     L+VVAIND G     +HL +YDS  G F  +V+    + + V G  I V + RNP  LPW
Sbjct:    3 IRLAINGFGRIGRNVLRALYTGHYREQLQVVAINDLGDAAVNAHLFQYDSVHGHFPGEVEH-DAESLRVMGDRIAVSAIRNPAELPW 88          

HSP 2 Score: 28.8758 bits (63), Expect = 2.397e-14
Identity = 11/25 (44.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P + P   LG+D+V+E TG+F  R+
Sbjct:   83 PAELPWKSLGVDIVLECTGLFTSRD 107          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.113e-14
Identity = 41/92 (44.57%), Postives = 53/92 (57.61%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKD---SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNR-NPVNLPWGD 514
            ++V INGFGRIGRNF R    +++   + +EVVA+ND       +HLLK+DS LG    DV   G D I V    I+ +  R  P  LPWGD
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVNDITDNSTLAHLLKFDSILGRLPYDVSLEGEDTIVVGPAKIKALEVREGPAALPWGD 94          

HSP 2 Score: 29.261 bits (64), Expect = 3.113e-14
Identity = 11/23 (47.83%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVD 558
            P   P G LG+D+V+E TG+F +
Sbjct:   87 PAALPWGDLGVDVVVESTGLFTN 109          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.761e-14
Identity = 50/109 (45.87%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKGQECL*TERAAAH 577
            ++VAINGFGRIGRN LR       + +EVVAIND G V+  +HLL++DS  G F A V   G D I V    I+V + RNP  LPW      +   G      E+AAAH
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTS-GDDWIDVGRGPIKVTAIRNPAELPWAGVDMAMECTGIFTT-KEKAAAH 109          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
G3P_XANFL6.472e-1550.59Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]
G3P_ZYMMO8.408e-1549.41Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P1_BACCE8.888e-1547.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_PARBA1.092e-1442.05Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_PICCI1.093e-1448.86Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PICPA1.420e-1446.59Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_HAEIN2.396e-1447.13Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_PSEAE2.397e-1445.98Glyceraldehyde-3-phosphate dehydrogenase OS=Pseudo... [more]
G3P_MYCAV3.113e-1444.57Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P2_RHOSH5.761e-1445.87Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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