CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.335e-13
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  245 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            A +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST GIF  ++K  G D + ++GK ++  + R+P  +PW
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQEGND-LVINGKTVKFYTERDPAAIPW 87          

HSP 2 Score: 22.3274 bits (46), Expect = 9.335e-13
Identity = 10/21 (47.62%), Postives = 11/21 (52.38%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P   P    G D V+E TGVF
Sbjct:   82 PAAIPWKETGADYVVESTGVF 102          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.340e-13
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W +
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDE 87          

HSP 2 Score: 23.0978 bits (48), Expect = 9.340e-13
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFVDRE 564
            +G+D+V E TG+F+  E
Sbjct:   88 VGVDVVAEATGIFLTDE 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.087e-12
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  245 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            A  KV INGFGRIGR   R  +  +   +++VA+ND     + A+++LKYDST G F+ D+K V +DG+ V+GK ++  + R+P N+PW +
Sbjct:    2 APTKVGINGFGRIGRIVFR--NAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIK-VLSDGLEVNGKKVKFYTERDPANIPWAE 89          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKGQECL-*TERAAAH 577
            +KV INGFGRIGR   R  +  +   +E+VA+ND       A+++LKYDST G F+ DVK    +G+ VDGK ++    R+P N+PW +  +   ++       TE+A+AH
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSENGLDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAH 110          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.419e-12
Identity = 44/111 (39.64%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKGQECL-*TERAAAH 577
            +KV INGFGRIGR   R  +  +   +E+VA+ND       A+++LKYDST G F+ DVK    +G+ VDGK ++    R+P N+PW +  +   ++       TE+A+AH
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSDNGLDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAH 110          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.574e-12
Identity = 37/88 (42.05%), Postives = 47/88 (53.41%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            LK+ INGFGRIGR   R      +  + +V IND       ++L KYDST G +   V     +GI +D + I   S RNP  LPWGD
Sbjct:    2 LKIGINGFGRIGRLVARI--AMANPQVTLVGINDLVPASNLAYLFKYDSTHGSYGGTVV-AKEEGIVIDDQFIPCFSQRNPAQLPWGD 86          

HSP 2 Score: 28.8758 bits (63), Expect = 1.574e-12
Identity = 12/21 (57.14%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVF 552
            P Q P G LG D V+E TG+F
Sbjct:   79 PAQLPWGDLGADYVVESTGLF 99          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.575e-12
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR  LR    +++S +EV+AIND       ++L K+DST G F  DV+    D + V  + IQ +S RN  NLPW D
Sbjct:    1 MKVVINGFGRIGRLVLRQIL-KRNSSVEVLAINDLVPGDALTYLFKFDSTHGRFPEDVR-CEADHLIVGKRKIQFLSERNVQNLPWKD 86          

HSP 2 Score: 27.335 bits (59), Expect = 1.575e-12
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  502 PLGGLGIDLVIEGTGVFVDRE 564
            P   LG+DLVIE TG+F  +E
Sbjct:   83 PWKDLGVDLVIECTGLFTKKE 103          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.575e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W +
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDE 87          

HSP 2 Score: 22.3274 bits (46), Expect = 1.575e-12
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFVDRE 564
            +G+D+V E TG+F+  E
Sbjct:   88 VGVDVVAEATGLFLTDE 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.575e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W +
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDE 87          

HSP 2 Score: 22.3274 bits (46), Expect = 1.575e-12
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFVDRE 564
            +G+D+V E TG+F+  E
Sbjct:   88 VGVDVVAEATGLFLTDE 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.575e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W +
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDE 87          

HSP 2 Score: 22.3274 bits (46), Expect = 1.575e-12
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFVDRE 564
            +G+D+V E TG+F+  E
Sbjct:   88 VGVDVVAEATGLFLTDE 104          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
G3P_COLGL9.335e-1342.70Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P1_ESCF39.340e-1345.45Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_SCLSC1.087e-1242.86Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]
G3P_COCP71.419e-1239.64Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM1.419e-1239.64Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P1_SYNY31.574e-1242.05Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_CHLPN1.575e-1246.59Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P1_SHIFL1.575e-1245.45Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_ECOLI1.575e-1245.45Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL61.575e-1245.45Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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