CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.575e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R    +K S +E+VAIND       +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W +
Sbjct:    3 IKVGINGFGRIGRIVFRA--AQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVE-VKDGHLIVNGKKIRVTAERDPANLKWDE 87          

HSP 2 Score: 22.3274 bits (46), Expect = 1.575e-12
Identity = 8/17 (47.06%), Postives = 13/17 (76.47%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFVDRE 564
            +G+D+V E TG+F+  E
Sbjct:   88 VGVDVVAEATGLFLTDE 104          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 64.6994 bits (156), Expect = 1.575e-12
Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R  H R    +EV  IND    K  +HLLKYDS    F  +V       + VDGK I+  + ++P  +PW +
Sbjct:    1 MKVGINGFGRIGRQVFRILHSR---GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEV-AYDDQYLYVDGKAIRATAVKDPKEIPWAE 84          

HSP 2 Score: 28.1054 bits (61), Expect = 1.575e-12
Identity = 11/25 (44.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDRE 564
            P++ P    G+ +VIE TGVF D +
Sbjct:   77 PKEIPWAEAGVGVVIESTGVFTDAD 101          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.045e-12
Identity = 36/88 (40.91%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +KV INGFGRIGR   R  +  +   + VVA+ND       A+++LKYDST G F+  +  V ++G++V+GK +     R+P ++PWG
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTID-VNSNGLTVNGKAVTFYQERDPASIPWG 87          

HSP 2 Score: 26.9498 bits (58), Expect = 2.045e-12
Identity = 12/28 (42.86%), Postives = 15/28 (53.57%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P   P G  G++ V+E TGVF   E  S
Sbjct:   81 PASIPWGKHGVEYVVESTGVFTTTEKAS 108          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  257 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +AING GRIGR  LR     K+  L V AIN +   +  +HLL YD+T G+++  V+P+ + GI V+G  I+++S+RNP NLPW +
Sbjct:    5 IAINGMGRIGRMVLRIALNNKN--LNVKAINASYPPETIAHLLNYDTTHGVYDKKVEPIES-GIKVNGHEIKLLSDRNPENLPWNE 87          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 2
Query:  257 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +AING GRIGR  LR     K+  L V AIN +   +  +HLL YD+T G+++  V+P+ + GI V+G  I+++S+RNP NLPW +
Sbjct:    5 IAINGMGRIGRMVLRIALNNKN--LNVKAINASYPPETIAHLLNYDTTHGVYDKKVEPIES-GIKVNGHEIKLLSDRNPENLPWNE 87          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.421e-12
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            +KV INGFGRIGRN  R      +  +EVVA+ND       +HLL+YDS  G  +A+V  V  + + V+GK I+V + R+P  L WG
Sbjct:    3 VKVGINGFGRIGRNVFRA--ALNNPEVEVVAVNDLTDANMLAHLLQYDSVHGKLDAEVS-VDGNNLVVNGKTIEVSAERDPAKLSWG 86          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.657e-12
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            ++V INGFGRIGR   R    R D  +E+V IND       +++LKYDST G FE  V+  G   + V+GK I+V S R+P NL W +
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRND--IEIVGINDLLDADYMAYMLKYDSTHGRFEGAVEVQG-GALVVNGKKIRVTSERDPANLKWNE 87          

HSP 2 Score: 21.1718 bits (43), Expect = 2.657e-12
Identity = 6/14 (42.86%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFV 555
            + +D+V+E TG+F+
Sbjct:   88 INVDVVVESTGLFL 101          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.657e-12
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR   R    R D  +E+V IND    +  ++ LKYDST G F+  V+ +    + V+GK I+V S R+P NL W +
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPD--IEIVGINDLLDAEYMAYSLKYDSTHGRFDGTVEVI-KGALVVNGKSIRVTSERDPANLKWDE 86          

HSP 2 Score: 23.8682 bits (50), Expect = 2.657e-12
Identity = 7/17 (41.18%), Postives = 15/17 (88.24%), Query Frame = 1
Query:  514 LGIDLVIEGTGVFVDRE 564
            +G+++V+E TG+F+ +E
Sbjct:   87 IGVEVVVESTGLFLTQE 103          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.449e-12
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  257 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            V INGFGRIGR  LR    R D  + V+AIND       A+++ KYDST G F+  V   G   + ++GK I+V   R+P N+PWG
Sbjct:    5 VGINGFGRIGRLVLRIALSRDD--INVIAINDPFIAPDYAAYMFKYDSTHGKFKGTVTHEGKY-LVINGKKIEVFQERDPANIPWG 87          

HSP 2 Score: 27.7202 bits (60), Expect = 3.449e-12
Identity = 12/26 (46.15%), Postives = 15/26 (57.69%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREG 567
            P   P G  G+D V++ TGVF   EG
Sbjct:   81 PANIPWGKEGVDYVLDSTGVFTTIEG 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  254 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            K+AINGFGRIGR  LR     +   LEVVAIND    K  +HL KYDS+ G F  +++ V      V+GK ++V +  +P  LPWGD
Sbjct:    3 KIAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIE-VKEGAFVVNGKEVKVFAEADPEKLPWGD 86          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
G3P1_ECO571.575e-1245.45Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_THEAQ1.575e-1242.05Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P_AJECA2.045e-1240.91Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P2_STAES2.421e-1245.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAEQ2.421e-1245.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P1_BACSU2.421e-1244.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3PC_TRYBB2.657e-1245.45Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_LEIME2.657e-1244.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PICAN3.449e-1245.35Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_CLOAB4.129e-1247.13Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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