CX294957

Overview
NameCX294957
Unique NameCX294957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294957_ssr209 microsatellite CX294957_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5796 contig Ccv1_Contig5796:63..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.129e-12
Identity = 46/110 (41.82%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  254 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDWASTL*LKGQECL-*TERAAAH 577
            KV INGFGRIGR  LR  +  +   +EVVA+ND       A ++ KYDST G F+ D+K  G D + +DGK I+    R+P N+PW D  +   ++       TE+A+AH
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIKVDGKD-LVIDGKRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAH 110          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 5.811e-12
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 508
            ++VAING+GRIGR+ LR  +   K   +++VAIN+    +   HL +YD+T G F   VK +    + +    I+++   NP NLPW
Sbjct:    2 IRVAINGYGRIGRSILRALYESAKRDRIQIVAINELAKPEAMLHLTQYDTTHGRFHTQVK-LDNQHMIIGDDAIKLLHEPNPANLPW 87          

HSP 2 Score: 27.7202 bits (60), Expect = 5.811e-12
Identity = 13/27 (48.15%), Postives = 15/27 (55.56%), Query Frame = 1
Query:  484 PQPRQSPLGGLGIDLVIEGTGVFVDRE 564
            P P   P   L ID+V E TGV  DR+
Sbjct:   80 PNPANLPWKELDIDIVYEATGVINDRQ 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_LACLA (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactococcus lactis subsp. lactis GN=gap PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.043e-12
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +KV INGFGRIGR  LR    ++   +EV  IND       +HLLKYD+T G F+  V+ V  DG  V+GK ++V + RNP ++ W D
Sbjct:    3 VKVGINGFGRIGRLALR--RIQEVEGVEVAHINDLTDPAMLAHLLKYDTTQGRFKGTVE-VKEDGFDVNGKFVKVTAERNPEDIQWAD 87          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_YERPS (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pseudotuberculosis GN=epd PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.548e-12
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW +
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSE 90          

HSP 2 Score: 26.9498 bits (58), Expect = 7.548e-12
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  496 QSPLGGLGIDLVIEGTGVFVDREGG 570
            Q P   LGID+V++ +GV+  RE G
Sbjct:   85 QLPWSELGIDVVLDCSGVYGSREDG 109          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_YERPN (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=epd PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.548e-12
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW +
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSE 90          

HSP 2 Score: 26.9498 bits (58), Expect = 7.548e-12
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  496 QSPLGGLGIDLVIEGTGVFVDREGG 570
            Q P   LGID+V++ +GV+  RE G
Sbjct:   85 QLPWSELGIDVVLDCSGVYGSREDG 109          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_YERPE (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis GN=epd PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.548e-12
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW +
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSE 90          

HSP 2 Score: 26.9498 bits (58), Expect = 7.548e-12
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  496 QSPLGGLGIDLVIEGTGVFVDREGG 570
            Q P   LGID+V++ +GV+  RE G
Sbjct:   85 QLPWSELGIDVVLDCSGVYGSREDG 109          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: E4PD_YERPA (D-erythrose-4-phosphate dehydrogenase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=epd PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.548e-12
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+    D + V   +I+++       LPW +
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEISVVAINELASAEGMAHLLKYDSSHGRFAWDVRQ-ECDSLYVGDDIIRLIHQSEIEQLPWSE 90          

HSP 2 Score: 26.9498 bits (58), Expect = 7.548e-12
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  496 QSPLGGLGIDLVIEGTGVFVDREGG 570
            Q P   LGID+V++ +GV+  RE G
Sbjct:   85 QLPWSELGIDVVLDCSGVYGSREDG 109          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_ZYGRO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosaccharomyces rouxii PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 7.550e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWG 511
            + V++NGFGRIGR   R    RKD  + +VAIND       A+++ KYDST G F+ +V     D I ++GK + V + ++P  LPWG
Sbjct:    2 VNVSVNGFGRIGRLVTRIAISRKD--INLVAINDPFISTDYAAYMFKYDSTHGRFDGEVSH-DKDHIILNGKKVAVFNEKDPAALPWG 86          

HSP 2 Score: 27.7202 bits (60), Expect = 7.550e-12
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREGGS 573
            P   P G LG+D+ I+ TG+F + +  +
Sbjct:   80 PAALPWGKLGVDVAIDSTGIFKEMDSAN 107          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 60.8474 bits (146), Expect = 7.552e-12
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 2
Query:  251 LKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            +K+ INGFGRIGR   R      KD  +EVVAIND       +++LKYDS  G F+ +V  V  + + V+GK I++ + ++P  L WG+
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKD--IEVVAINDLLEPDYLAYMLKYDSVHGRFDGEVS-VDGNTLVVNGKKIRLTAVKDPAELKWGE 88          

HSP 2 Score: 29.6462 bits (65), Expect = 7.552e-12
Identity = 11/26 (42.31%), Postives = 18/26 (69.23%), Query Frame = 1
Query:  490 PRQSPLGGLGIDLVIEGTGVFVDREG 567
            P +   G +G D+V+E TG+F+ +EG
Sbjct:   81 PAELKWGEVGADVVVESTGIFLTKEG 106          
BLAST of CX294957 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.198e-12
Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 2
Query:  254 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGD 514
            KVAINGFGRIGR  LR     +   LEVVAIND    K  +HL KYDS+ G F  +++ V      V+GK ++V +  +P  LPWG+
Sbjct:    3 KVAINGFGRIGRLALR--RILEVPGLEVVAINDLTDAKMLAHLFKYDSSQGRFNGEIE-VKEGAFVVNGKEVKVFAEADPEKLPWGE 86          
The following BLAST results are available for this feature:
BLAST of CX294957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 114
Match NameE-valueIdentityDescription
G3P1_TRIKO4.129e-1241.82Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
E4PD_SHEHH5.811e-1237.93D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
G3P_LACLA7.043e-1245.45Glyceraldehyde-3-phosphate dehydrogenase OS=Lactoc... [more]
E4PD_YERPS7.548e-1240.00D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPN7.548e-1240.00D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPE7.548e-1240.00D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_YERPA7.548e-1240.00D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
G3P_ZYGRO7.550e-1242.05Glyceraldehyde-3-phosphate dehydrogenase OS=Zygosa... [more]
G3P_RALSO7.552e-1241.57Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_CLOPA9.198e-1247.13Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]

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Properties
Property NameValue
Genbank descriptionC05065A08SK DroRLeaf1 Citrus clementina cDNA clone C05065A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294957 ID=CX294957; Name=CX294957; organism=Citrus clementina; type=EST; length=587bp
GAGGCCACTGCTTGCTCTTGCTTGCATCATCCAGCAAATACCTATCATGG
CTTCGGCCACTCTCTCTGTAGCCAAATCAGCTCTTCAGGGAAATGGTAAG
GGATTCTCAGAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTGG
CAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTG
CTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAG
CTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAG
GTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATG
ACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACC
CTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTC
TGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATC
TCCCCTGGGGGGACTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGT
TTGTAGACAGAGAGGGCGGCAGCACATCAGCTGTGCA
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