CX294963
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 8.289e-37 Identity = 73/125 (58.40%), Postives = 90/125 (72.00%), Query Frame = 3 Query: 147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 S+++ GWFSE +P+WPGEAHSLKV++ILF+GKS+YQ V+VF+S YGKVL+LDG++QLTE+DECAYQEMI HLPLCSIP+PK RE+SRH SVE IDICE Sbjct: 13 SSILPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICE 123
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 5.373e-36 Identity = 73/125 (58.40%), Postives = 87/125 (69.60%), Query Frame = 3 Query: 147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 S V+ GWFSE +PMWPGEAHSLKV+++LF+GKS+YQ V+VF+S YGKVLVLDG++Q+TE+DECAYQEMI HLPLCSI PK RE+SRH SVE IDICE Sbjct: 28 SAVIPGWFSEI--------------SPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICE 138
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YEAST (Spermidine synthase OS=Saccharomyces cerevisiae GN=SPE3 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.915e-25 Identity = 59/126 (46.83%), Postives = 77/126 (61.11%), Query Frame = 3 Query: 144 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 H T+V GWF E T MWPG+A +LKV+++L KS+YQ+VL+F+S YG VLVLD ++Q TE+DE AYQEMIAHL L S P+PK RE+ +HDSVE +C+ Sbjct: 7 HPTIVDGWFREISDT-------------MWPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHDSVEEAWLCD 119
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SCHPO (Spermidine synthase OS=Schizosaccharomyces pombe GN=SPBC12C2.07c PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 7.279e-25 Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 3 Query: 144 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 H + GWF E N MWPG+A +LKVK++L+ GKS+YQ+VLVFES YG VLVLDG +Q TE+DE +YQEMIAHL L S P+PK RE+ +H+ VE +C+ Sbjct: 8 HPLIKDGWFREI--------------NNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCD 119
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_MOUSE (Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.216e-23 Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 + + GWF E+ S +WPG+A SL+V+++L +S YQ++LVF S YG VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+ RE+ +H SVE + CE Sbjct: 14 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCE 124
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_HUMAN (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.216e-23 Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3 Query: 147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 + + GWF E+ S +WPG+A SL+V+++L +S YQ++LVF S YG VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+ RE+ +H SVE + CE Sbjct: 14 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCE 124
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_DICDI (Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23 Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 3 Query: 153 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 + +GWFSE WPG + SL+V+++L KSEYQ+ LVF+S ++G VLVLDG++Q TE+DE AYQEMI H+PL S PSPK RE+ +H VE + +CE Sbjct: 4 IQNGWFSEISE--------------FWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCE 112
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: PMT1_TOBAC (Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23 Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 3 Query: 150 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 ++ GWFSE + +WPGEA SLKV+++LF+GKS+YQ+V++FES YGKVL LDG +Q TE Y EMI HLPL SIP+PK E+ R+ S+E IDI E Sbjct: 83 SIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPSIEKIDIVE 192
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: PMT3_TOBAC (Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 3 Query: 147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 +++ GWFSE + +WPGEA SLKV+++LF+GKS+YQ+V++FES YGKVL LDG +Q TE Y EMI HLPL SIP+PK E+ R+ ++E IDI E Sbjct: 88 NSIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVE 198
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: PMT4_TOBAC (Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.518e-22 Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 3 Query: 147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521 +++ GWFSE + +WPGEA SLKV+++LF+GKS+YQ+V++FES YGKVL LDG +Q TE Y EMI HLPL SIP+PK E+ R+ ++E IDI E Sbjct: 126 NSIKLGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVE 236 The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bpback to top |