CX294963

Overview
NameCX294963
Unique NameCX294963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig602 contig Ccv1_Contig602:1..523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 8.289e-37
Identity = 73/125 (58.40%), Postives = 90/125 (72.00%), Query Frame = 3
Query:  147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            S+++ GWFSE               +P+WPGEAHSLKV++ILF+GKS+YQ V+VF+S  YGKVL+LDG++QLTE+DECAYQEMI HLPLCSIP+PK             RE+SRH SVE IDICE
Sbjct:   13 SSILPGWFSEI--------------SPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEQIDICE 123          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPD1_ORYSJ (Spermidine synthase 1 OS=Oryza sativa subsp. japonica GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.373e-36
Identity = 73/125 (58.40%), Postives = 87/125 (69.60%), Query Frame = 3
Query:  147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            S V+ GWFSE               +PMWPGEAHSLKV+++LF+GKS+YQ V+VF+S  YGKVLVLDG++Q+TE+DECAYQEMI HLPLCSI  PK             RE+SRH SVE IDICE
Sbjct:   28 SAVIPGWFSEI--------------SPMWPGEAHSLKVEKVLFQGKSDYQNVMVFQSSTYGKVLVLDGVIQVTERDECAYQEMITHLPLCSIKDPKKVLVIGGGDGGVLREVSRHSSVEQIDICE 138          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_YEAST (Spermidine synthase OS=Saccharomyces cerevisiae GN=SPE3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.915e-25
Identity = 59/126 (46.83%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  144 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            H T+V GWF E   T             MWPG+A +LKV+++L   KS+YQ+VL+F+S  YG VLVLD ++Q TE+DE AYQEMIAHL L S P+PK             RE+ +HDSVE   +C+
Sbjct:    7 HPTIVDGWFREISDT-------------MWPGQAMTLKVEKVLHHEKSKYQDVLIFKSTTYGNVLVLDNVIQATERDEFAYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHDSVEEAWLCD 119          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_SCHPO (Spermidine synthase OS=Schizosaccharomyces pombe GN=SPBC12C2.07c PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.279e-25
Identity = 59/126 (46.83%), Postives = 76/126 (60.32%), Query Frame = 3
Query:  144 HSTVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            H  +  GWF E               N MWPG+A +LKVK++L+ GKS+YQ+VLVFES  YG VLVLDG +Q TE+DE +YQEMIAHL L S P+PK             RE+ +H+ VE   +C+
Sbjct:    8 HPLIKDGWFREI--------------NNMWPGQAMTLKVKKVLYAGKSKYQDVLVFESETYGHVLVLDGAIQATERDEFSYQEMIAHLALNSHPNPKKVLVIGGGDGGVLREVVKHECVEEAILCD 119          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_MOUSE (Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.216e-23
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            + +  GWF E+ S              +WPG+A SL+V+++L   +S YQ++LVF S  YG VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+             RE+ +H SVE +  CE
Sbjct:   14 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCE 124          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_HUMAN (Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.216e-23
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            + +  GWF E+ S              +WPG+A SL+V+++L   +S YQ++LVF S  YG VLVLDG++Q TE+DE +YQEMIA+LPLCS P+P+             RE+ +H SVE +  CE
Sbjct:   14 AAIREGWFRETCS--------------LWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYGNVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCE 124          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: SPEE_DICDI (Spermidine synthase OS=Dictyostelium discoideum GN=spsA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 3
Query:  153 VVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            + +GWFSE                  WPG + SL+V+++L   KSEYQ+ LVF+S ++G VLVLDG++Q TE+DE AYQEMI H+PL S PSPK             RE+ +H  VE + +CE
Sbjct:    4 IQNGWFSEISE--------------FWPGNSFSLEVEKVLHHEKSEYQDFLVFKSKSFGNVLVLDGVIQATERDEFAYQEMITHIPLFSHPSPKRVLVVGGGDGGVLREVVKHPLVESVTLCE 112          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: PMT1_TOBAC (Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 6.812e-23
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  150 TVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            ++  GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK              E+ R+ S+E IDI E
Sbjct:   83 SIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPSIEKIDIVE 192          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: PMT3_TOBAC (Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +++  GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK              E+ R+ ++E IDI E
Sbjct:   88 NSIKPGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVE 198          
BLAST of CX294963 vs. ExPASy Swiss-Prot
Match: PMT4_TOBAC (Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.518e-22
Identity = 56/125 (44.80%), Postives = 75/125 (60.00%), Query Frame = 3
Query:  147 STVVSGWFSESQSTSDKTGKTMYFNNPMWPGEAHSLKVKEILFKGKSEYQEVLVFESLAYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKTXXXXXXXXXXXXREISRHDSVELIDICE 521
            +++  GWFSE  +              +WPGEA SLKV+++LF+GKS+YQ+V++FES  YGKVL LDG +Q TE     Y EMI HLPL SIP+PK              E+ R+ ++E IDI E
Sbjct:  126 NSIKLGWFSEFSA--------------LWPGEAFSLKVEKLLFQGKSDYQDVMLFESATYGKVLTLDGAIQHTENGGFPYTEMIVHLPLGSIPNPKKVLIIGGGIGFTLFEMLRYPTIEKIDIVE 236          
The following BLAST results are available for this feature:
BLAST of CX294963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
SPD1_DATST8.289e-3758.40Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPD1_ORYSJ5.373e-3658.40Spermidine synthase 1 OS=Oryza sativa subsp. japon... [more]
SPEE_YEAST1.915e-2546.83Spermidine synthase OS=Saccharomyces cerevisiae GN... [more]
SPEE_SCHPO7.279e-2546.83Spermidine synthase OS=Schizosaccharomyces pombe G... [more]
SPEE_MOUSE5.216e-2343.20Spermidine synthase OS=Mus musculus GN=Srm PE=2 SV... [more]
SPEE_HUMAN5.216e-2343.20Spermidine synthase OS=Homo sapiens GN=SRM PE=1 SV... [more]
SPEE_DICDI6.812e-2343.90Spermidine synthase OS=Dictyostelium discoideum GN... [more]
PMT1_TOBAC6.812e-2345.97Putrescine N-methyltransferase 1 OS=Nicotiana taba... [more]
PMT3_TOBAC1.162e-2244.80Putrescine N-methyltransferase 3 OS=Nicotiana taba... [more]
PMT4_TOBAC1.518e-2244.80Putrescine N-methyltransferase 4 OS=Nicotiana taba... [more]

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Properties
Property NameValue
Genbank descriptionC05065B02SK DroRLeaf1 Citrus clementina cDNA clone C05065B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294963 ID=CX294963; Name=CX294963; organism=Citrus clementina; type=EST; length=523bp
ATATGGAGGGCGGCGAAGGAAAAGGTTTGGGATGCCAGAAGACTATGGAT
GGGAAGGAGAGTAACAAGAATGGTTCAGCGGGGGCAATCCCTTCTTGTTG
CTTGAAAGCAAGGGCTTCAGCCCCAGAGCTTGATGCCAAATGCCACTCCA
CTGTTGTTTCTGGGTGGTTTTCAGAATCTCAGTCTACCTCTGATAAAACT
GGCAAAACAATGTACTTCAACAATCCAATGTGGCCAGGAGAGGCCCATTC
ATTGAAAGTAAAAGAAATTTTATTCAAGGGAAAGTCTGAGTACCAAGAGG
TCCTGGTTTTTGAGTCATTGGCATATGGGAAAGTGCTTGTTCTTGATGGA
ATTGTTCAACTAACGGAGAAAGATGAATGTGCTTACCAGGAGATGATAGC
TCATCTTCCCCTTTGTTCGATTCCATCTCCGAAAACCGTTCTAGTTGTTG
GTGGTGGTGATGGTGGTGTTCTTAGGGAGATTTCTCGTCACGACTCTGTT
GAGCTTATTGATATATGTGAGAT
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